Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1066 ATGTCGTTTTGGAACTGCCATTTCATTAGACGACACGTCGTGCATTTCCTCTTCCCATTGCCTGGAACAGCGACTTCATTCTCTTCTCTGTTTCCCATATTCAACTTCGCAGTGCGTATTATTATGTCGTCGGAAGAAATTGGTCCAGATCAGAGGATCGATAACGGTCTTAATTCACCCCTAGTGTACCAAGACGACCCCTTGCGTTACAGCTGCGGTGCCCCACAACGTCGGATGGGGGACCCAGGTTCGAGAACGAGGGAGCTTGGCGGTTTCCTTAATGAAAAGATGTTCGCTGTGGACCGTGAACGCTTTTTTGCTGCTAAGGGATTGGAGTTCCGTCGTAATGTTTACGGGGATTGCTCGGACCAGCGGAACCCACCGGACGCCCGGAATTGGAACGGGAACGGGAGCGCTGCTACTCCTAGCGGCGATGAATCGGACGGCGAGGATGATGAAGACGGTGAGGAAGATGACGACGACGATGATGTTGAGGGTGGCGCTGAAGTAGAAAGACTAGTTGGTGTTAACGATGCAAGCAAAGGGAATTCCAATCACAATTCAATTAACGAAATTAACAATAACAGAATGAGTGGTGGTAACCTGGCTAATGCTGCAGATGGAATATCGAACGGAAAAGATCAACATCATTCGCCCTACGGATCCAGTAGAGAGTTATTGGGGAAGGATGGAGAAATTGGTCCGGCGCAGAATAATTCAAGGGGAAACGACGAAGATCATCAGCAAGAAAGGTTAGATAAATCGCAGAGTGCAGTCACGATCGCCGAAACTGATTGTGAGGAGTATTATTCACACTATCTTCAAGGCACGGAGGGCTCAGCTTCTGTGCAGAAAGCTATAGCAGGGGAAAATGGTTGCGGATTTAGCGGAAGGAAGGATGTTATCTATTCAAGCGAGTCAGTCGAGTCATTGAGGGCAGTGCTTTCAGATCCTATAACGGGAGCTCTTATGGATGACGCAATGATATTGCCTTGTGGACATTCCTTTGGTGGAGGAGGAATACAGCATGTTATTAGAATGAAAGCTTGTTGCACTTGTTCCCAACCCATATCTGAAGAATCAATATCTCCAAATCTAACACTTAGAGTGGCTGTGCAGGCGTACTGTCGGGAAGAGGAGTCACGGTTTTACCGATCATCCAAAAGAAGAAGAGAAATATTTGATCAGGGTGGTTATGGTGATTCAACAGTTATGGAACAACCGAGAGGCAGAGGTGTTCAATTTCCATTTGCTGTGATGGACCGGGTTATTATAAAGATACTGATCGGAGCAAAATTGGATCAGGGGAACAAGAGGACACCGCAGCGTTTTGTCGGACGGGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTTTGTGGTGAAGACGTTGGACAATGCAGAGAGTGTTAAATTGCAGTATCGGTCGCTGGCTAAGGTTTCAGATGACCCTTCAAAACCAGCCTCCAGCAAGGTGGGACCTACTAATTGGCTTTAA 1500 0.472 MSFWNCHFIRRHVVHFLFPLPGTATSFSSLFPIFNFAVRIIMSSEEIGPDQRIDNGLNSPLVYQDDPLRYSCGAPQRRMGDPGSRTRELGGFLNEKMFAVDRERFFAAKGLEFRRNVYGDCSDQRNPPDARNWNGNGSAATPSGDESDGEDDEDGEEDDDDDDVEGGAEVERLVGVNDASKGNSNHNSINEINNNRMSGGNLANAADGISNGKDQHHSPYGSSRELLGKDGEIGPAQNNSRGNDEDHQQERLDKSQSAVTIAETDCEEYYSHYLQGTEGSASVQKAIAGENGCGFSGRKDVIYSSESVESLRAVLSDPITGALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPISEESISPNLTLRVAVQAYCREEESRFYRSSKRRREIFDQGGYGDSTVMEQPRGRGVQFPFAVMDRVIIKILIGAKLDQGNKRTPQRFVGREAIVTTQCLNGWFVVKTLDNAESVKLQYRSLAKVSDDPSKPASSKVGPTNWL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1066 499 MobiDBLite consensus disorder prediction 178 205 - -
Lele25g1066 499 Pfam U-box domain 316 380 IPR003613 GO:0004842|GO:0016567
Lele25g1066 499 MobiDBLite consensus disorder prediction 118 258 - -
Lele25g1066 499 SUPERFAMILY RING/U-box 306 380 - -
Lele25g1066 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 380 IPR013083 -
Lele25g1066 499 MobiDBLite consensus disorder prediction 145 167 - -
Lele25g1066 499 MobiDBLite consensus disorder prediction 127 143 - -
Lele25g1066 499 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 67 493 - -
Lele25g1066 499 ProSiteProfiles U-box domain profile. 310 382 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1066 Lele-ChrLele25 6923138 6926752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1066 255 499 Plant U-box Gene Family AT5G05230 58.167 1.64e-90 279