Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1059 ATGCTTCGGAGTTGGACCAGGACACCGCCATTGCCATTGCCCCCTCTGAGGATGCTATCATCTTTGTCGTCACCATCATCTTCTGCTGCTTGTGACAGTAGACGACCCTCCTTTCTCAGAAACACTTCTTCAAATCCCAGAATCTCCCTCCCTCATCTTCCTCCTCTGTCTTCAACCTCTCATACTAGCCCTCAAAGAATGACGCTTTCGACCAGCTGTTTTGGGGTCAGTATCCCCATTCCCATATCCGGAAACCCCGATATGGAAAACCAAGAACTCGAATCCGATGACCCTCAGTCGCTTGTGGTGGTGTCGTTCTACAAGTTCGCGGATTTCCCTGACCACGCCAACTTGCGGAAACCCTTGAAGTCACTCTGTGAAGAACTGCACGTTTCAGGGGGTATCATTCTTGCGCCTGAAGGAATCAATGGCAGCATATGTGGCACTCGCGAGTCAGTGGAGAAAGTTCTTGCGTTTATACAAAGTGATAACCGTCTTAAGGGTCTAAGACAAGTGGAATCACCTGTGAGTCCTGAGGAAGAAGCTATTCATCATGGACATAGTGCCAGTTCTCCTCTTGCTGCAGGGGAAGATGCACCTTTCCGATGGGATCATGTGAGGGTTAAGTTGAAGAAAGAGATTGTTACGCTTGGGATGCCTGCTGTATCACCTACGGAAAGGGTTGGAAAGTATGTGAGCCCGAGAGATTGGAATGCATTGATCAGTGACCCAGATATGGTGGTGATTGATGTGCGGAACGATTATGAAACCAGAATAGGAAAGTTTAAAGGAGCCGTTGATCCATGTACGTCATCATTTCGTGAATTCCCTTCTTGGGTGGAGGATCATTTTGAGCTTACTAGAAACAATGGCAAGCCTGCAATAGTTGAGGCAAACAATTCAGGTGAAAGTGTAGAAAAGGAATCACAAAATCTTGAACCTGAACATATGCCACGTGTTGCTATGTATTGCACTGGAGGTATTCGATGTGAAAAAGCGTCAAGTTTGCTCCTCAGTAAAGGTTTCAAAGAGGTGTATCACTTGGAAGGTGGAATTCTGAAATATCTGGAGGAAGTGCCAAAAACAGAAAGTCTATGGCAGGGTGAGTGCTTTGTGTTTGACAAGCGAGTCTCTGTGGAGCATGGTTTGGTGCAAGGCAATTTCAAGCTATGCTATGGTTGTAAGCAGCCTGTGAGTGATGCTGACATGGAAGCTTCGGAATTCGAATATGGCGTTTCTTGCCCGCACTGTTTTTCGCAGAAATCAGAGGAAGAGAAGGAGAGGGCTCGAGCTCGGCAAAGACAGTTTGAGAGATGGGGAATCATAGGCGGTCCAGACAAAGGTCGCCGACCAACAAGTAAACTGGATAGCGGCGGTAGGAAATCTGACAAGCTTTCACGTTCAATTTAA 1410 0.4695 MLRSWTRTPPLPLPPLRMLSSLSSPSSSAACDSRRPSFLRNTSSNPRISLPHLPPLSSTSHTSPQRMTLSTSCFGVSIPIPISGNPDMENQELESDDPQSLVVVSFYKFADFPDHANLRKPLKSLCEELHVSGGIILAPEGINGSICGTRESVEKVLAFIQSDNRLKGLRQVESPVSPEEEAIHHGHSASSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPAVSPTERVGKYVSPRDWNALISDPDMVVIDVRNDYETRIGKFKGAVDPCTSSFREFPSWVEDHFELTRNNGKPAIVEANNSGESVEKESQNLEPEHMPRVAMYCTGGIRCEKASSLLLSKGFKEVYHLEGGILKYLEEVPKTESLWQGECFVFDKRVSVEHGLVQGNFKLCYGCKQPVSDADMEASEFEYGVSCPHCFSQKSEEEKERARARQRQFERWGIIGGPDKGRRPTSKLDSGGRKSDKLSRSI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1059 469 Pfam UPF0176 acylphosphatase like domain 102 214 IPR040503 -
Lele25g1059 469 MobiDBLite consensus disorder prediction 1 67 - -
Lele25g1059 469 MobiDBLite consensus disorder prediction 173 194 - -
Lele25g1059 469 MobiDBLite consensus disorder prediction 19 67 - -
Lele25g1059 469 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 88 433 IPR020936 -
Lele25g1059 469 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 211 390 IPR036873 -
Lele25g1059 469 Gene3D - 216 399 IPR036873 -
Lele25g1059 469 MobiDBLite consensus disorder prediction 449 469 - -
Lele25g1059 469 CDD RHOD_YceA 229 357 - -
Lele25g1059 469 Hamap tRNA uridine(34) hydroxylase [trhO]. 99 401 IPR020936 -
Lele25g1059 469 ProSiteProfiles Rhodanese domain profile. 242 364 IPR001763 -
Lele25g1059 469 MobiDBLite consensus disorder prediction 425 469 - -
Lele25g1059 469 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Lele25g1059 469 Pfam Rhodanese-like domain 237 357 IPR001763 -
Lele25g1059 469 SMART rhod_4 232 361 IPR001763 -
Lele25g1059 469 Gene3D - 88 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1059 Lele-ChrLele25 6847376 6850885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1059 89 469 Sulfurtransferasese or Rhodanese AT2G40760 76.240 0.0 600
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1059 25 6847376 6850885 Lele27g1016 27 17808818 17812329 hybridization
Lele25g1059 25 6847376 6850885 Lele28g1059 28 6868321 6871053 hybridization