Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1049 ATGCGCCTCGCGAACGCCGTAGCCGTTTTAGACCGACCAGCAAGGTGCTACAGGCAAATTAAAAACAAACCTTACCCAAAATCACGATTCTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTACGATGTTGGGATGAAAAAGAAAGGCGTTGATGAGTTTCCTTTCTGCGTCCATCTTGTTAGTTGGGAGAAAGAAAACGTTTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCTTGCAACAAATACATGGCTAAATTTGCCGGAAAGGATGCATTCCACTTGAGGGTTAGGGTACATCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACAGGAATGAGAGGCGCATTTGGAAAGCCCCAAGGAACATGTGCTAGAGTGGCCATTGGTCAGGTTCTGCTTTCTGTTCGATGCAAGGACAGCAACAGCCATCATGCTCAGGAGGCCCTCCGTCGTGCTAAGTTCAAGTTCCCTGGCCGCCAAAAGATCATTGTTAGCAGAAAATGGGGCTTCACCAAATTTAGCCGTACTGACTATGTGAGGTTCAAGTCTGAGAACAGGATCGTGCCAGATGGTGTAAATGCCAAGCTTCTTGGATGCCATGGACCTTTGGCTAACCGTCAGCCAGGAAGAGCTTTTCTGCATGCAATTTCTTAG 687 0.4731 MRLANAVAVLDRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYVRFKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLHAIS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1049 228 Pfam Ribosomal protein L16p/L10e 20 174 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele25g1049 228 ProSitePatterns Ribosomal protein L10e signature. 116 137 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lele25g1049 228 FunFam 60S ribosomal protein L10 9 214 - -
Lele25g1049 228 CDD Ribosomal_L16_L10e 49 174 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele25g1049 228 PANTHER 60S RIBOSOMAL PROTEIN L10 12 221 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele25g1049 228 SUPERFAMILY Ribosomal protein L16p/L10e 12 181 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele25g1049 228 Gene3D Ribosomal protein L10e/L16 10 225 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele25g1049 228 TIGRFAM uL16_euk_arch: ribosomal protein uL16 12 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1049 Lele-ChrLele25 6802125 6804521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1049 12 228 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.636 4.02e-142 394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1049 25 6802125 6804521 Lele01g0132 01 781160 784606 CCT
Lele25g1049 25 6802125 6804521 Lele02g0131 02 757468 757908 CCT
Lele25g1049 25 6802125 6804521 Lele03g0138 03 750851 751291 CCT
Lele25g1049 25 6802125 6804521 Lele04g0130 04 751666 752887 CCT
Lele02g0124 02 724859 731086 Lele25g1049 25 6802125 6804521 CCT
Lele03g0127 03 712995 715729 Lele25g1049 25 6802125 6804521 CCT
Lele25g1049 25 6802125 6804521 Lele27g1025 27 17860592 17863614 hybridization
Lele25g1049 25 6802125 6804521 Lele28g1048 28 6816018 6821563 hybridization