LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g1048	ATGGGAACATCTGGGCCTGATGGGACAGATCAACACACCATTTCTGCATCATCTTCTTCTGCCGGAGTTGTAAATACTTCTGATGGTAACAACAACACTGCCAGTTCTGGAAGGGGAACGTGGTATGGGGTGCGGTTGCCTTCTTCACTCTCATTTTTACTGGCTTACTCTGACCGTATTCGCACGAGCTCGCCAATCGGCTATTTTGAGTCTGCAATTGACCACGACGAAGCTACCGTTTCTGAATTGCGCCCTGATCGTCAAACTTCTTCCTTGGGTTCTGCCGCTGTAACCATCTGCAGTGGCTGTAGCAGCGAGAGCAGTTCAGGGGAAGTTACAGTACGAATTAGTGGAGCAGTTGAACGGAATGACAATGCAGGGTTGGGTTCTGTTTCTTCAGTGTCCCAAAATCAGCCTGTAGACGACGACGATTTGATGGGAAATAAAGGTGGAATGCCTGTTCTGAATGAGGATGCTGAAGGTAGCAGTGGAATTATGGCTAGCGAGAGAGCTCCTCTAGTGTCCTCATCAATGTCTATGGCAGGTAGTACAAGTGAACAAGATGATATTGATGCTGGGAATGGCTTTGAACGCAATCTTCCGGGTTTATTGTCTCATGAAAGTAATGATTTTCAGCAACTTGCTAAATTGCTAGAGCAGGTTCTTCCTTTCTCGCTGTTGTTGTTGGTTGTGTTCATTCGCCAGCATCTGCAAGGTTTCATCATCACAATTTGGATTTCCATTGTGATGTTCAAGTCAAATGAAATGGTTAAGAAGCAGACGGCTCTAAAGGGAGATAGGAAAGTCTCAGTTCTTATCGGTATCTCATTTGTCTTCTTGATTCATATGATGTGCATTTACTGGTGGTATCAAGATGACGATCTTTTATACTCGCCACTCCTCTTGCTTCCTCCAAAAGCAACACCTCATTTCTGGCATGCGATATTCATCGTTCTGATTAATGACGTACTTGTGCGGCAAGCAGCGATGTCTTTCAAGTGCTTGATACTTATATATTTCAAAAATGACCGAGGTCACAGCTTCCGTCTGCAGGCTCAAATATTAACTCTGGTCGAGCACGTGCTGCTGCTGTACCGTACCTTCTTGCCAGCGCCTGTTTGGTACCGATTTTTCCTAAACAGGGAATATGGAAGTCTCTTTTCGTCGCTGACCACGGGGTTGTACCTAACCTTCAAGTTAACATCCATTGTTGAGAAGGTCCAATGCTTCTTTTCTGCCTTAAAAGCATTATCCGGCAAGAATATTCTCTATGGCGTATATGCTACAAAGGAACAGGTAAATGCCGCGGGCGATCTCTGTGCTATATGCCAAGAGAAGATGCGCGGTCCTATCCTGTTGCGCTGTAAACACATTTTCTGTGAAGAGTGTGTGTCAGAATGGTTTGACAGAGAAAGAACTTGTCCACTGTGTAGAGCATTGGTGAAGGCCGGCGATATTCGGTCTTTCGGCGATGGGTCAACAAGTCTGTTTTTCCAGTTATGTTAA	1506	0.4522	MGTSGPDGTDQHTISASSSSAGVVNTSDGNNNTASSGRGTWYGVRLPSSLSFLLAYSDRIRTSSPIGYFESAIDHDEATVSELRPDRQTSSLGSAAVTICSGCSSESSSGEVTVRISGAVERNDNAGLGSVSSVSQNQPVDDDDLMGNKGGMPVLNEDAEGSSGIMASERAPLVSSSMSMAGSTSEQDDIDAGNGFERNLPGLLSHESNDFQQLAKLLEQVLPFSLLLLVVFIRQHLQGFIITIWISIVMFKSNEMVKKQTALKGDRKVSVLIGISFVFLIHMMCIYWWYQDDDLLYSPLLLLPPKATPHFWHAIFIVLINDVLVRQAAMSFKCLILIYFKNDRGHSFRLQAQILTLVEHVLLLYRTFLPAPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSIVEKVQCFFSALKALSGKNILYGVYATKEQVNAAGDLCAICQEKMRGPILLRCKHIFCEECVSEWFDRERTCPLCRALVKAGDIRSFGDGSTSLFFQLC	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g1048	501	PANTHER	UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN	45	500	IPR044235	GO:0061630\|GO:1904294
	Lele25g1048	501	MobiDBLite	consensus disorder prediction	126	142	-	-
	Lele25g1048	501	MobiDBLite	consensus disorder prediction	1	40	-	-
	Lele25g1048	501	MobiDBLite	consensus disorder prediction	125	150	-	-
	Lele25g1048	501	SUPERFAMILY	RING/U-box	434	482	-	-
	Lele25g1048	501	CDD	RING-HC_RNFT1_like	439	478	-	-
	Lele25g1048	501	MobiDBLite	consensus disorder prediction	1	39	-	-
	Lele25g1048	501	Pfam	Zinc finger, C3HC4 type (RING finger)	438	481	-	-
	Lele25g1048	501	ProSitePatterns	Zinc finger RING-type signature.	455	464	IPR017907	-
	Lele25g1048	501	ProSiteProfiles	Zinc finger RING-type profile.	440	478	IPR001841	-
	Lele25g1048	501	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	425	487	IPR013083	-
	Lele25g1048	501	SMART	ring_2	440	477	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g1048	Lele-ChrLele25	6795573	6799531	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g1048	87	500	C3H Transcription Factor Family	AT5G01960	57.729	9.90e-171	486