Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1009 ATGTCACAGCAGAGGCAAAATAGGATGATGATGAATAATCAAAGCAATGCAAAACAAGTTGGTGACACGACCTATACGAAGATCTTCATTGGAGGGTTGACTTGGGGAACTAAAAGAGACTCTCTGAAACGCTATTTTGAGCAGTTCGGAGAGATCTCAGAAGCTGTTGTTATCACTGACAGAAACACCGGAGCTTCCAAAGGCTATGGCTTCGTTACTTTTAAGGATCCTGAATCTGCAATGAGAGCTTGCCAGAATCCATATCCTTTGATTGATGCCAGGAGGGCTAATTGTAATCTTGCAATTCTTGGTGCACGCAAATTCAACCCGTCATCTACCACAGGAGCTGAGAAATTCGACAATACCAATTCATGGGCCATGGTACCAATCCCATTTCAAGGCTCTTCTTCATATTACAATCAGCATGCACCCCATTACACTTTTCCCTTTCCAACACCCTATAGGTATCCTGGTTATCCTCCCTCACAAGAAATCTATGCAATGAACTACTATAATGTTTATGGAGGGCAACAGGTTCCATTTCGATGGCGTCCTGCAATATATCAACCATTTTATGGGGTGAGTAGCAATTCAATGAGATTGCCAGCAGAAGCAATGGGGAAGAAGACGACCCAGTATTCTGATATACCCCCACCCCAGGAAATGTTGTCAGTTGTTGGAGTACCACCAGAACCTATTTCAGTTTCTTCTTCAATACCCACCTCTGGTCCAGTATCAAGAAAAGTGACAGCAACAGTTTCTGGTTCTGCAGAAGCAGCAGCAGCTGCCAAGATGGGAACCTCATCCCCGGTACACAAATTATCAGCTTAG 831 0.4392 MSQQRQNRMMMNNQSNAKQVGDTTYTKIFIGGLTWGTKRDSLKRYFEQFGEISEAVVITDRNTGASKGYGFVTFKDPESAMRACQNPYPLIDARRANCNLAILGARKFNPSSTTGAEKFDNTNSWAMVPIPFQGSSSYYNQHAPHYTFPFPTPYRYPGYPPSQEIYAMNYYNVYGGQQVPFRWRPAIYQPFYGVSSNSMRLPAEAMGKKTTQYSDIPPPQEMLSVVGVPPEPISVSSSIPTSGPVSRKVTATVSGSAEAAAAAKMGTSSPVHKLSA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1009 276 CDD RRM_RBM24_RBM38_like 26 101 - -
Lele25g1009 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Lele25g1009 276 Gene3D - 1 115 IPR012677 -
Lele25g1009 276 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Lele25g1009 276 SMART rrm1_1 27 99 IPR000504 GO:0003723
Lele25g1009 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Lele25g1009 276 PANTHER BOULE-RELATED 14 230 IPR037366 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1009 Lele-ChrLele25 6528949 6530256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1009 22 101 C2H2 Transcription Factor Family AT2G19380 42.500 1.46e-14 71.6