Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0953 ATGGACTTGGACAGCATCGAGTGTGTTTCGTCTTCAGATGGCATGGATGAGGATGAGATCCGACACCATAGTCTGCATCCTCACCCCCATCTTCATTCTGAGTTTTCTTCAACTAAGCCTCGCAATGGAGGCACCAATAACAACAATATTTTGGGTCCTACGGCCATTGCTCCCGCAACCAGTGTCCACGAATTGCTGGAGTGCCCTGTCTGTACCAATTCAATGTACCCACCAATTCATCAGGTTAGTTCCCTCAACGATTTCTATTTCTATTGTATTCTCTTGCATCAACTTACTTATATAGTTGTTTATCGGGGGAGGGGCTTGTCTCCTGAAATACAGAAACATTGCCACAACGGGCACACACTGTGTTCCACCTGCAAAACAAGAGTTCACAACCGATGTCCAACTTGTAGACAAGAACTTGGAGATATTAGGTGTCTAGCACTTGAGAAGGTGGCTGAATCACTTGAGTTACCATGCAAGTATTATTCCCTTGGATGCCCAGAAATCTTTCCTTACTACAGCAAACTCAAACATGAGGCAAGCTGCAATTTCAGGCCATATAATTGTCCTTATGCTGGATCTGAATGTTCTGTTGTTGGAGATATCCCATTCCTTGTTGCTCATTTGAGGGACGATCATAAGGTCTTTCATTGTTTTGGCCAGTACTTCTGCCTTCATTTCGAAGCTTTTCAGCTTGGCATGGCTCCTGTGTACATGGCATTCCTTCGTTTTATGGGTGATGAGAACGAAGCTCGAAACTACAGTTATAGCCTAGAGGTTGGGGCAAATGGTAGGAAACTTATATGGGAAGGGACTCCCCGGAGTATCCGGGATAGCCACCGGAAAGTTAGGGATAGCCATGATGGTCTTATTATTCAACGAAACATGGCCTTATTTTTCTCTGGTGGCGATAGGAAGGAACTCAAGCTTAGAGTTACAGGAAGAATCTGGAAGGAACAACAGAATCCTGATGCTGGGGTGTGCATACCGAATCTTTGTAGCTGA 1011 0.4481 MDLDSIECVSSSDGMDEDEIRHHSLHPHPHLHSEFSSTKPRNGGTNNNNILGPTAIAPATSVHELLECPVCTNSMYPPIHQVSSLNDFYFYCILLHQLTYIVVYRGRGLSPEIQKHCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEASCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0953 336 FunFam E3 ubiquitin-protein ligase SINAT3 153 211 - -
Lele25g0953 336 MobiDBLite consensus disorder prediction 14 35 - -
Lele25g0953 336 SUPERFAMILY TRAF domain-like 156 319 - -
Lele25g0953 336 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 208 315 IPR008974 GO:0005515
Lele25g0953 336 MobiDBLite consensus disorder prediction 36 50 - -
Lele25g0953 336 MobiDBLite consensus disorder prediction 1 50 - -
Lele25g0953 336 FunFam E3 ubiquitin-protein ligase SINAT5-like 201 315 - -
Lele25g0953 336 ProSiteProfiles Zinc finger SIAH-type profile. 156 216 IPR013010 GO:0008270
Lele25g0953 336 Pfam Seven in absentia protein family 217 315 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele25g0953 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 207 IPR013083 -
Lele25g0953 336 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 217 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0953 Lele-ChrLele25 6136434 6138755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0953 59 322 C3H Transcription Factor Family AT2G41980 62.457 8.52e-127 363