Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0943 ATGATAATCAAGCGGAACCTGAAAACCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACTCGGCTGGGGACGACGATGACTGCTCTACGTCTCGGAAGAAGAGGAAGACTAATGGGTATTACCCTTTGAATCTTCTCGGCGACGTCGCCGCTGGTATACTTCCTGTTAGCTTCCATGGCTTACTAGGCGCTGGTGTTTCTGAGAAGAGCCTTTCTGCATCATGGTGTGCGGAAGTCTCGTGCTCCCCTGTTGAGACGGAGTCAAAGTCCAAGGTTGGGAACTCTGTAACAGCTAAGATGAATCGGGCTGCGGAGGAACCACGGCCGCCGCTGGTCAGAACGTCAAGAGGCCGAGTTCAGGTACTCCCGTCGCGTTTCAACGATTCAGTTATTGAGAATTGGAGGAAAGAGGGTAAGACGAACTCTCGTGATTATAGTTTTGAAGACGAACTTGATAGTAGAAAGGAGAATAGTTTTAGGACACCGAAATCATACAATCAGAATACCAGAAAAGGTAGAAACGATAATAAAATTGGCTACAAGTCTCGGAAGTATTCGGCATTGTATGAGGAGGAGGATGGGGTAAGAGAGGATGGGCCAGTAAAGTATAGGAATTTGACGAGGAAGTATTCAACTTCTAGCGCACTCAACCCAAAGCGTGAGCAATTAATTGAACATGAGAGACGCGGATTTATGTATATGGACGAAGTTGATATAACTGGTAACGAGAGATTTTTGAAGGAGAATGGCGAGAAAAAGGATGGATTATATGGACCAGAAGACTTTTACGCAGGTGATATAGTGTGGGCTAAAGCAGGGAAGGAGGAGCCCTTTTGGCCAGCCATTGTCATCGATCCAATGTCTCAGGCACCTGAGCTGGTCTTGAGGTCTTGTATAGCTGATGCAGCTTGTGTGATGTTTCTTGGGTACTCTGCAAATGAAAATCAAAGGGACTATGCATGGGTGAAGCGTGGGATGATTTTCCCGTTTATAGATTATGTAGACAGGTTTCAGGGACAGGTGGAATTGAGTTACTATAACCCTTCTGATTTTCAAGTAGCAATAGAGGAGGCATTCTTGGCAGATCGGGGATTTACAGAGAAGTTGATAGCAGATATAAATTTAGCAGCTGGCAACATAGGGTATGATGAAACCTTTCCCAAAGGCATACAGGAGGCCCCTGGTTCAAAGCAGTATGCAGGATGTCACTTTCTGAGCCAGGAGTTTTTTGATACGAGGAAAGATACACGACCCTGTGAAGTTTGTGGCTTGGATCTTCCTTTCAAAACGTCAAAGAAAACGAAGGATTCAACTCCCGGTGGCCAATTTTTATGTAAAACGTGTGCCAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGTTGTGATGGATGTAAAGTTTGGGTGCATGCAGAATGTGACAAAATTTCCAGCAACCTTTTCAAGAATCTTGGAGGAACTGATTATTACTGCCCAACGTGTAAAGCAAAGTTTGACTTTGAGTTATCCGATTCAGAAAAGTCACAGCCAAGAGTCAAATGGAACAAGAACAATGAGCAGCTAGTGCTACCAAACAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCTAGCCTTCACCTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACGGAGAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATCAAGAAATTGGAGAACAAGTGTTAGGGTGAAAGGCTCGATGCTTCCACTGGAACAATGGATGCTACAGCTGGCAGAATTTCATGCAAATGCTCAAGTTTCTGTCAAACCCAAAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTGCATTTTTACAAGAGAAGTATGAGCCAGTTTATGCTAAGTGGACAACAGAACGGTGTGCTGTGTGTAGATGGGTAGAAGATTGGGACTATAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAGTGCTATGGAGCAAGAAATGTTCGAGACTTTACGTCATGGGTTTGCAAAGCTTGTGAAACACCTGACGTTAAACGAGAGTGTTGTCTTTGTCCTGTAAAGGGTGGTGCACTAAAGCCAACTGATGTGGACACGCTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAAAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCTAATTCTTTTGTGAAGATTTGTGTTATATGTAAGCAAATTCATGGTTCATGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGATATCGCATGGAGTTGCATTGCTCAGAGAAAAATGGCAGGCAAACAACAAAAATGGTTTCTTATTGTGCATACCACAGGGCTCCAAATCCAGACACGGTTTTGATTATGCAAACCCCTCTTGGTGTTATTTCTACCAAGAGCCTTCTCCAAAATAAGAAAAAATCTGGGTCAAGGTTAATTTCATCTAATAGAATAAAGCTAGAAGACACTCCTATAGAGAATATCGAGGATGAACCATTTTCTGCTGCAAGGTGCCGTGTCTTTCAAAGAACAAATCTGAGCAAAAAGAGAGCAGCGGATGAGGCCATTTCACATCGAGCGAAAGGTCACTGCCATCATCCTTTAGACACAATACAGAGATTAAATGCATACAGGATAATTGAGGAGCCTCCAACATTTTCTTCTTTTAGAGAACGTTTGTACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCGGGTATACATGGATGGGGCCTCTTTGCACGTAGAAATATACTAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCTGATCTGAGGGAGGCCTATTATAAGATAGAAGGCAAAGATTGCTATCTTTTTAAGATAAGTGAAGAAGTGGTGGTTGATGCCACTGATAAAGGAAATATTGCCCGGCTTATCAACCATTCTTGTATGCCGAATTGCTATGCGAGAATTATGAGCGTCGGTGATGATGAGAGCCGTATTGTACTCATCGCCAAGACCAATGTTCCCGCTGGTGATGAACTAACGTATGACTACTTGTTTGATCCTGATGAACCAGATGAAAACAAAGTGCCATGTTTATGTAAAGCTCCAAATTGCCGGAAATTCATGAACTAG 3255 0.4307 MIIKRNLKTQMPSLKRCKLGDSAGDDDDCSTSRKKRKTNGYYPLNLLGDVAAGILPVSFHGLLGAGVSEKSLSASWCAEVSCSPVETESKSKVGNSVTAKMNRAAEEPRPPLVRTSRGRVQVLPSRFNDSVIENWRKEGKTNSRDYSFEDELDSRKENSFRTPKSYNQNTRKGRNDNKIGYKSRKYSALYEEEDGVREDGPVKYRNLTRKYSTSSALNPKREQLIEHERRGFMYMDEVDITGNERFLKENGEKKDGLYGPEDFYAGDIVWAKAGKEEPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYSANENQRDYAWVKRGMIFPFIDYVDRFQGQVELSYYNPSDFQVAIEEAFLADRGFTEKLIADINLAAGNIGYDETFPKGIQEAPGSKQYAGCHFLSQEFFDTRKDTRPCEVCGLDLPFKTSKKTKDSTPGGQFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYYCPTCKAKFDFELSDSEKSQPRVKWNKNNEQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKSRNWRTSVRVKGSMLPLEQWMLQLAEFHANAQVSVKPKKPSLKERKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDVKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQNKKKSGSRLISSNRIKLEDTPIENIEDEPFSAARCRVFQRTNLSKKRAADEAISHRAKGHCHHPLDTIQRLNAYRIIEEPPTFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNILEGEMVLEYRGEQVRRSIADLREAYYKIEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVPAGDELTYDYLFDPDEPDENKVPCLCKAPNCRKFMN 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0943 1084 FunFam Histone-lysine N-methyltransferase 916 1084 - -
Lele25g0943 1084 MobiDBLite consensus disorder prediction 146 178 - -
Lele25g0943 1084 CDD PHD_TCF19_like 459 509 - -
Lele25g0943 1084 Pfam PWWP domain 266 359 IPR000313 -
Lele25g0943 1084 SMART PostSET_3 1068 1084 IPR003616 -
Lele25g0943 1084 SMART set_7 942 1065 IPR001214 GO:0005515
Lele25g0943 1084 ProSiteProfiles Zinc finger PHD-type profile. 650 701 IPR019787 -
Lele25g0943 1084 CDD SET_SETD1-like 929 1080 - -
Lele25g0943 1084 Pfam PHD-finger 458 511 IPR019787 -
Lele25g0943 1084 Gene3D SET domain 835 1084 IPR046341 -
Lele25g0943 1084 ProSiteProfiles Zinc finger PHD-type profile. 456 512 IPR019787 -
Lele25g0943 1084 SUPERFAMILY FYVE/PHD zinc finger 651 715 IPR011011 -
Lele25g0943 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 514 IPR013083 -
Lele25g0943 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 821 IPR013083 -
Lele25g0943 1084 PANTHER PHD FINGER PROTEINS 53 527 - -
Lele25g0943 1084 CDD PHD_ATX3_4_5_like 652 698 IPR042011 -
Lele25g0943 1084 SMART PHD_3 763 819 IPR001965 -
Lele25g0943 1084 SMART PHD_3 652 699 IPR001965 -
Lele25g0943 1084 SMART PHD_3 458 510 IPR001965 -
Lele25g0943 1084 MobiDBLite consensus disorder prediction 93 112 - -
Lele25g0943 1084 FunFam Histone-lysine N-methyltransferase 640 701 - -
Lele25g0943 1084 SUPERFAMILY SET domain 935 1081 IPR046341 -
Lele25g0943 1084 Pfam PHD-finger 665 699 - -
Lele25g0943 1084 FunFam Histone-lysine N-methyltransferase 702 821 - -
Lele25g0943 1084 Pfam PHD-zinc-finger like domain 706 818 - -
Lele25g0943 1084 ProSiteProfiles SET domain profile. 942 1059 IPR001214 GO:0005515
Lele25g0943 1084 SUPERFAMILY FYVE/PHD zinc finger 457 513 IPR011011 -
Lele25g0943 1084 SUPERFAMILY Tudor/PWWP/MBT 258 362 - -
Lele25g0943 1084 Gene3D - 260 364 - -
Lele25g0943 1084 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1084 IPR025780 -
Lele25g0943 1084 Pfam SET domain 953 1058 IPR001214 GO:0005515
Lele25g0943 1084 MobiDBLite consensus disorder prediction 146 160 - -
Lele25g0943 1084 ProSiteProfiles PWWP domain profile. 265 334 IPR000313 -
Lele25g0943 1084 ProSiteProfiles Post-SET domain profile. 1068 1084 IPR003616 -
Lele25g0943 1084 CDD ePHD_ATX3_4_5_like 707 818 IPR041955 -
Lele25g0943 1084 ProSitePatterns Zinc finger PHD-type signature. 653 698 IPR019786 -
Lele25g0943 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 702 IPR013083 -
Lele25g0943 1084 ProSiteProfiles Extended PHD (ePHD) domain profile. 704 819 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0943 Lele-ChrLele25 6037726 6046550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0943 653 818 C2H2 Transcription Factor Family AT3G14740 32.948 5.42e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele25g0943 zf-HC5HC2H_2 2.9e-27 CL0390