LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g0917	ATGCTTTTGGTCTCCACTGTGGGACCCCAGCATCCCATATTTTCCCCTTCTATTCTCTTCGACTTGAATCCCTATATTCTTCTTCGAGGCTCCAAACAGGTTCCCTTTCGAAACTTCAAGGAAAGCTGGGCCTATTTGTTTCGCCCAGAATACGCTCTGTTTGGGATAGAAATCATGGAACACAGTATCCTCTGCAAATACACTGTCCACGAAAGTGTCACTAAGAAGTACACCAAGCCGGTGGCGGCCAACAAGGCTTCTGATGTTCACAGTCCCATAGAGGCCAGAGTGGTACGGATATCCGTCACCGATCCAGACGCCACTGACTCCTCCAGCGATGAGGAAGGAGAGTTCTGCTTTGATCGCCAGAGAGTGAAGCGTTATGTGAACCAGGTTAACATCGAGCCAAGCTGCAAGAGCGCGGTGCCTTCCAATCCGCGAAAGAGGCGCGCCGGAGAAACTCAAGCTTGCCGGCGGCCGGTGAAGGTTACTTCTACCAATAACGGAAGGAAGTTCCGAGGAGTACGACAGAGACCTTGGGGTAAATGGGCGGCGGAGATTCGAGATCCGGCTCGCCGCGTACGCGTGTGGTTGGGCACCTTCGACACTGCGGAGGAAGCAGCTATGGTTTATGATAATGCAGCGATTAAGATACGGGGACCAGACGCTTTGACAAACTTCGTGACCCCACCGCCGAGGGAAAAGCCGGAAGAAGCAGAGGTGGCGGTGAAGCGGGAAATCAATGTGGTAGTGAAGTCGGAAGCGTCGGGCTATGATTCCGGCGATGAATCACACCGTCTACCATCTCCCACTTCTGTGTTGCAATTCAGAAGCAATTGCAGCGAAGAGACCGAACCCCAGAAGGCAAGCGAACCGGATAAAGAAAGCGAGACCGAGACGGAGCCAGCCGAAGTGGAAGACGTGTTCCGGGAGTGTGAAGGCGAAACGAGTCTGTCAGACGAGAGGGCAGACTATTTTGGGTTCGGCATGCCAAAGGAGGAGGATTACTTCGGGTTCGAAATGCCAAATTGGGAGCAAGTGTTGGATTTCTCGACTCCAGAACCGGAGTACTCATTGCTGTTCGAAGAACCTCCTCCGTTCCTGGGGGAGACGACGGTGATGTTGGCAGAGGAAGATTTCAGAGTGGACGACACGATCGTGGGGGAGTCAGAGTTGGAGTTGGAGAAATCATTCTCGCCGTCGACGTTGTGCCAAATGGACGATTACTTTCAAGATATATTGTCGGGTTCGGACCCTCTGGTGGTGCTGTGA	1272	0.5291	MLLVSTVGPQHPIFSPSILFDLNPYILLRGSKQVPFRNFKESWAYLFRPEYALFGIEIMEHSILCKYTVHESVTKKYTKPVAANKASDVHSPIEARVVRISVTDPDATDSSSDEEGEFCFDRQRVKRYVNQVNIEPSCKSAVPSNPRKRRAGETQACRRPVKVTSTNNGRKFRGVRQRPWGKWAAEIRDPARRVRVWLGTFDTAEEAAMVYDNAAIKIRGPDALTNFVTPPPREKPEEAEVAVKREINVVVKSEASGYDSGDESHRLPSPTSVLQFRSNCSEETEPQKASEPDKESETETEPAEVEDVFRECEGETSLSDERADYFGFGMPKEEDYFGFEMPNWEQVLDFSTPEPEYSLLFEEPPPFLGETTVMLAEEDFRVDDTIVGESELELEKSFSPSTLCQMDDYFQDILSGSDPLVVL	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g0917	423	Pfam	AP2 domain	171	220	IPR001471	GO:0003700\|GO:0006355
	Lele25g0917	423	PRINTS	Ethylene responsive element binding protein signature	194	210	IPR001471	GO:0003700\|GO:0006355
	Lele25g0917	423	PRINTS	Ethylene responsive element binding protein signature	172	183	IPR001471	GO:0003700\|GO:0006355
	Lele25g0917	423	SUPERFAMILY	DNA-binding domain	171	228	IPR016177	GO:0003677
	Lele25g0917	423	Gene3D	AP2/ERF domain	170	229	IPR036955	GO:0003700\|GO:0006355
	Lele25g0917	423	MobiDBLite	consensus disorder prediction	265	283	-	-
	Lele25g0917	423	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	95	318	-	-
	Lele25g0917	423	MobiDBLite	consensus disorder prediction	254	316	-	-
	Lele25g0917	423	FunFam	Ethylene-responsive transcription factor 2	170	229	-	-
	Lele25g0917	423	ProSiteProfiles	AP2/ERF domain profile.	171	228	IPR001471	GO:0003700\|GO:0006355
	Lele25g0917	423	CDD	AP2	171	227	IPR001471	GO:0003700\|GO:0006355
	Lele25g0917	423	SMART	rav1_2	171	234	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g0917	Lele-ChrLele25	5882767	5884880	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g0917	65	343	AP2-EREBP Transcription Factor Family	AT4G27950	45.455	5.58e-64	207

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele25g0917		AP2	5.3e-14	CL0081