Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0905 ATGTCTGCTAGGAATGAACACCATACCGTCCCCCTTTCGGTGCTTCTGAAGCGGGAATTGGCAAATGAGAAAATTGAGAAACCAGAAATTATGCATGGCCAAGCCAGCCAGAGCAAAAAAGGCGAAGATTTCACGCTAATAAAGACGGAATGCCAAAGGGTGGTGGGAGATGGGGTGTCTACTTATTCTGTTTTTGGGCTATTTGATGGTCACAATGGATCGGCTGCTGCGATTTATTCCAAGGAGAATCTCTTAAATAATGTTTTAAGTGCGGTTCCCCCAGATCTTAGCCGAGAGGAGTGGGTGTCAGCATTGCCTAGGGCTTTGGTTGCAGGCTTTGTCAAAACTGATAAAGAGTTTCAAGAGAAAGGACAAAAATCAGGAACAACAGTAACCTTTGTGATTATTGAAGGATGGGTTGTTACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAGCCTTCTGAAGGTGGAATATATTACTTGTCAGCAGATCATAGGCTAGAAACTAATGAAGAGGAGAGGGAGCGTATAACTGCTAGCGGGGGTGAGGTTGGTCGTCTAAATACTGGTGGAGGTGCACAGGTTGGTCCTTTGAGGTGTTGGCCTGGCGGCTTGTGTCTTTCAAGATCTATTGGTGATATGGATATTGGTGAATATATTGTCCCTGTACCTTATGTCAAGCAAGTGAAGCTGTCGACTGCTGGAGGCAGGCTTATTATCTGCAGTGATGGTGTTTGGGATGCTTTGACTGCTGAAGCAGCCCTTGATTGTTGTCGTGGCATGGCAGCAGATGTTGCAGCATCCCTTCTTGTTAGAGAAGCTTTACAAGCGAAGGGACTTAGAGATGATACTACCTGCATTGTTGTTGATATATTACCTCAGGAGAAGCCACCTGCTCCTGTGCAACAAACGAAGAAGGCAGGAAAAATGTTTAAGGCAATGTTCCGCAAAAAGACCTCTGAATCATCTTCTTGTAATGACAAAGAGTATCAGGAACCAGATGTGGTAGAGGAACTGTACGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTAGATACAAAATACCCACTCTGCAACATGTTCAAGTTGTTTGTTTGTGCGGTATGTCAAAAGGAGATCAAACCTGGAGAGGGTATTTCAATCCATGCAGGCGTATCCAACCCAGGAAAATTGCGTCCCTGGGATGGACCTTTTCTTTGTTTAAGTTGCCAGGAGAAGAAAGAAGCAATGGAAGGGAAAAGAACATCAGATAGACTGAGCAGTGTGAGTGACTGA 1281 0.4481 MSARNEHHTVPLSVLLKRELANEKIEKPEIMHGQASQSKKGEDFTLIKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYSKENLLNNVLSAVPPDLSREEWVSALPRALVAGFVKTDKEFQEKGQKSGTTVTFVIIEGWVVTVASVGDSRCILEPSEGGIYYLSADHRLETNEEERERITASGGEVGRLNTGGGAQVGPLRCWPGGLCLSRSIGDMDIGEYIVPVPYVKQVKLSTAGGRLIICSDGVWDALTAEAALDCCRGMAADVAASLLVREALQAKGLRDDTTCIVVDILPQEKPPAPVQQTKKAGKMFKAMFRKKTSESSSCNDKEYQEPDVVEELYEEGSAMLSERLDTKYPLCNMFKLFVCAVCQKEIKPGEGISIHAGVSNPGKLRPWDGPFLCLSCQEKKEAMEGKRTSDRLSSVSD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0905 426 CDD PP2Cc 39 293 IPR001932 -
Lele25g0905 426 PANTHER PROTEIN PHOSPHATASE 31 292 - -
Lele25g0905 426 Gene3D - 31 299 IPR036457 -
Lele25g0905 426 SUPERFAMILY PP2C-like 37 293 IPR036457 -
Lele25g0905 426 SMART PP2C_4 21 291 IPR001932 -
Lele25g0905 426 SMART PP2C_SIG_2 54 293 IPR001932 -
Lele25g0905 426 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Lele25g0905 426 FunFam probable protein phosphatase 2C 12 32 299 - -
Lele25g0905 426 Pfam Protein phosphatase 2C 54 277 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0905 Lele-ChrLele25 5785238 5789031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0905 1 426 PP2C-type Phosphatase Gene Family AT1G47380 78.972 0.0 712
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0905 25 5785238 5789031 Lele02g0847 02 5151663 5155391 CCT
Lele25g0905 25 5785238 5789031 Lele03g0860 03 5014298 5020054 CCT
Lele25g0905 25 5785238 5789031 Lele04g0863 04 5280963 5289136 CCT
Lele25g0905 25 5785238 5789031 Lele27g1173 27 18894160 18897949 hybridization
Lele25g0905 25 5785238 5789031 Lele28g0893 28 5761903 5765626 hybridization