Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0880 ATGGACAAGACGACGATGATGATACAACTTCCTGAATTCTCTGGAACTTACAAAAACGACATCTTTTCCGATGACTTTTCACTTCCTGAGCTCTCCCCGGCCGCTAGGAGGACGACGGACCCCAACATACACGGAACCATGCTGCATTTTTTGGACAACTCTCCTGCCACGTCGTCGTTCAAGAGTTTACAGTCTGCTGCAATTTCCTTTACTAACCCTACTTCGATGATTCAAGAGCGAGATCCATCTGCTTGCGGTAGAGCATGGGAGAAAGGGATGTCAATGGCGGCGATGAGGGAGATGATATTCAGGATAGCGGTGATGCAGCCGATACAGATAGACCCGGAGTCAGTGAAGCCACCAAAGCGGAGGAACGTGAAGATTTCGAAGGATCCTCAGAGCGTGGCGGCTCGCCACCGCAGAGAGAGGATCAGCGAGAGAATAAGGATACTGCAGAGACTGGTTCCGGGAGGGACGAAGATGGACACAGCTTCCATGTTAGACGAAGCCATTCACTATGTGAAATTTCTCAAGACTCAGGTTCAGTCACTCGAACGCGCTGCAGCCAGCAAGCCTCCAGGGCTAGGATTCCCTGTGGCCATGTCCACTGCATCTTCCACCTCGTATCTTCCTATCCCATCAAAACCTTACCAGTTTGCTACTCAAAATGTTCATCGTTTCGGAGATGAAGAATAA 696 0.5 MDKTTMMIQLPEFSGTYKNDIFSDDFSLPELSPAARRTTDPNIHGTMLHFLDNSPATSSFKSLQSAAISFTNPTSMIQERDPSACGRAWEKGMSMAAMREMIFRIAVMQPIQIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAASKPPGLGFPVAMSTASSTSYLPIPSKPYQFATQNVHRFGDEE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0880 231 Gene3D - 127 191 IPR036638 GO:0046983
Lele25g0880 231 FunFam BHLH transcription factor 131 193 - -
Lele25g0880 231 Pfam Helix-loop-helix DNA-binding domain 138 177 IPR011598 GO:0046983
Lele25g0880 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 187 IPR036638 GO:0046983
Lele25g0880 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Lele25g0880 231 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 51 217 IPR045843 GO:0003700|GO:0006355
Lele25g0880 231 SMART finulus 134 183 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0880 Lele-ChrLele25 5639511 5640206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0880 94 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 87.255 2.94e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele25g0880 HLH 1.4e-06 No_clan