Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0879 ATGGTAAATTCGCATGGGGGTCACTCGACATTTGACACACCATATAGCTGCTCCACTTCCGTCCCTGATTTCTCCAACTTGTTGTTGGCTTCTTCAATGGCTCTGTTGTTGGACAATTGTGAGAGCATTCTACTCTCTTTAGACTCCCACAAATCGGTGCCCGCTCCTTTCCTCACCAAGACGTACCAGCTGGTGGATGATCCCGCCACCGATCACATTGTCTCTTGGGGCGAAGACGACACCACCTTTGTCGTTTGGCGTCCTCCTGAGTTCGCCAGGGATCTTCTCCCCAACTACTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACTTACGGTTTTAGGAAGATCGTGCCGGACAGATGGGAGTTCGCTAATGAGTTCTTTAGGAAGGGAGAGAAGCATTTACTCTGCGAGATCCATAGAAGAAAGACGGCTCAGATTCACAGCCAACATGTACCCGTTAACCATCCTTCTCATCACCGACCACTTCCGTTGGGACTCAACGTTCCTACTTTCTTTCCCTTCTCCACCCCCAGAGTCAGCGTCTCCCCGTCCAACGACTCCGATGACCAACCTCCCCATTGGTGTGACTCGCCACCGCTCACTTCTCCCAGCGGAGGCACCGGCATGGTGACGCTGTCCGAGGACAACGAAAGACTGAGAAGAAGCAACAACATGCTCATGTCTGAGCTGGCCCACTTGAAAAAACTCTATAACGACATCATCTATTTCGTCCAGAATCATGTCAAGCCCGTGGCTCCCACCAATTCTTTCTCTTCCTCTTTCCTCCTACCTAATACATGTTCGCCGTCACCGCCCTCTCTTTTGCCTCCTTCTGCTACAAACATTTCCATGGTGCAAAGGCAAATGAACCAGCTTCTGGGCTATTATTCTACTTCTGCTAACCCTAAGCAAAATATCCCTCAACTATCTCGTATCGTAAGACCTCCCACAGCCTACACATCAAAAAGTTCCGTCTCCATCGTGGAAGAACCCTACCGCAATAATACCAAGCTTTTTGGCGTGTCCCTTCAATCCAAGAAAAGGGTGCATCCTGACTCTGATTCTATTAGTCCTGCCAATTCCGAAATGAACAAGGTTCGATTGGTCTTGGAAAAAGACGATGGCCTCGCCTTGAATCTCATGCCACCTTCGGCGTGTTAG 1176 0.4966 MVNSHGGHSTFDTPYSCSTSVPDFSNLLLASSMALLLDNCESILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGEKHLLCEIHRRKTAQIHSQHVPVNHPSHHRPLPLGLNVPTFFPFSTPRVSVSPSNDSDDQPPHWCDSPPLTSPSGGTGMVTLSEDNERLRRSNNMLMSELAHLKKLYNDIIYFVQNHVKPVAPTNSFSSSFLLPNTCSPSPPSLLPPSATNISMVQRQMNQLLGYYSTSANPKQNIPQLSRIVRPPTAYTSKSSVSIVEEPYRNNTKLFGVSLQSKKRVHPDSDSISPANSEMNKVRLVLEKDDGLALNLMPPSAC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0879 391 MobiDBLite consensus disorder prediction 184 212 - -
Lele25g0879 391 SUPERFAMILY "Winged helix" DNA-binding domain 54 146 IPR036390 -
Lele25g0879 391 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 50 292 IPR027725 -
Lele25g0879 391 Pfam HSF-type DNA-binding 57 146 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele25g0879 391 Coils Coil 221 241 - -
Lele25g0879 391 FunFam Heat stress transcription factor B-4 49 147 - -
Lele25g0879 391 Gene3D - 49 148 IPR036388 -
Lele25g0879 391 ProSitePatterns HSF-type DNA-binding domain signature. 96 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele25g0879 391 PRINTS Heat shock factor (HSF) domain signature 108 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele25g0879 391 PRINTS Heat shock factor (HSF) domain signature 57 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele25g0879 391 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele25g0879 391 SMART hsfneu3 53 146 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0879 Lele-ChrLele25 5631394 5633023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0879 33 390 HSF AT1G46264 54.381 4.70e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele25g0879 HSF_DNA-bind 3.8e-32 CL0123