Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0874 ATGTACGGTACTCCTCCCTCGCTTCTCACCGCCTCTGCCATGCCTTCTGATTCCGACGATTTCTCCACGTTCTTCACCCACCTTCTCCATAACTCGCCCACCTCCTCCGTCCTTTCCAAACCCGAAACCTCACCGCCGCCGTGGCTCCCTTTGCCGGTGGGGACTGCCGGGTTTGGCCATTCGGTGTCGGACTCGCCTCACAGAAATGGCAAGTCCGTTGGTTCTTCGGATGCAGTTTCTGATTCTTTCGACTTTTATGATCCCTATGTTTACGTTCCGGCTGATGCGAAAGACGCTGCTGGAAACGAGTTCTTTCCCACTGGTATCGACGATTCTGATGAAAATACTTCCTTCAAAGAACACGGGATTTCTTCGGAGATTGATCCCGGCGATTTCATTTGTGCCGTCGAGAAGAATGCTGAGGCGTCGCAGACAAAGCGAGTCCCAGCACGTACTTCCTTAAAGAGGAGCAGAGCCGCAGAGGTTCATAATATGTCTGAGAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAGGCCTTACAGAGCTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGCTGGACGAGGCGATTGAATATTTGAAGCAACTTCAGTTTCAAGTGCAAATGTTAATGATGAGAAATGGCTTGAGCTTGCATCCAATGTGTTTACCAGGAGGAGGACTGCAACAATCTATGACGCTGCCTCAGACAGGGTTGAATTTCGACGACTCCCATTCATATCAGAATTCTTGTCGAGGAATTGCCTCGTCCGTGAATGCTGCAGAATGCTCGGTGCAACCAGACTTCAGTCTTCCAAAGCATTGCAACAGCATCTCATCGGATCTACCTGTGATGATGCCCTCCATCACAAACATGGTCAACCCAGATACCTCATCGTTTGCTTTCAGATTTCAAGTTGCACAATTTGACCCTTCTACGTCATCCAAGATGACGATAACGACTCGTGTGTGTAACATGAAGAATGCACTCTCAGATGGCGCACCACATCTTCATTTGGACGCCACAAAGATTGAAAAGAGCGCATCTTCAGATGTCTCCTAA 1074 0.4814 MYGTPPSLLTASAMPSDSDDFSTFFTHLLHNSPTSSVLSKPETSPPPWLPLPVGTAGFGHSVSDSPHRNGKSVGSSDAVSDSFDFYDPYVYVPADAKDAAGNEFFPTGIDDSDENTSFKEHGISSEIDPGDFICAVEKNAEASQTKRVPARTSLKRSRAAEVHNMSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQFQVQMLMMRNGLSLHPMCLPGGGLQQSMTLPQTGLNFDDSHSYQNSCRGIASSVNAAECSVQPDFSLPKHCNSISSDLPVMMPSITNMVNPDTSSFAFRFQVAQFDPSTSSKMTITTRVCNMKNALSDGAPHLHLDATKIEKSASSDVS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0874 357 MobiDBLite consensus disorder prediction 154 172 - -
Lele25g0874 357 MobiDBLite consensus disorder prediction 144 172 - -
Lele25g0874 357 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 16 305 IPR031066 -
Lele25g0874 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 218 IPR036638 GO:0046983
Lele25g0874 357 FunFam Basic helix-loop-helix transcription factor 153 216 - -
Lele25g0874 357 SMART finulus 164 213 IPR011598 GO:0046983
Lele25g0874 357 CDD bHLH_AtPIF_like 158 220 - -
Lele25g0874 357 Gene3D - 154 217 IPR036638 GO:0046983
Lele25g0874 357 Pfam Helix-loop-helix DNA-binding domain 162 208 IPR011598 GO:0046983
Lele25g0874 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0874 Lele-ChrLele25 5593273 5595504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0874 158 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 88.158 5.28e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele25g0874 HLH 9.3e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0874 25 5593273 5595504 Lele27g1205 27 19078041 19080263 hybridization
Lele25g0874 25 5593273 5595504 Lele28g0867 28 5590110 5593115 hybridization