Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0873 ATGTTGACTTTATTGACCGACGTAGCTTTGGTGTCTTGCTTCACTGTTGAGGTTCTGAATACATATTCACCCGCATTGTTTAGAGCATCTTTTAGTGCTGCCCCAATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGCCTGAAACCTTAGAATTCAACTGTGGATCCACTTCAAGTAATCCTACTGTGGATCAGCAAATTTGCTGGAATAATATGCGGAATCCTGCTGATAACAATGGCGATATACCTGAGTATTTACTTCCTTTGAGCGATATGAATCCACCATATATGAATTCTATAAACCATGAATGGCAGAATTCAAGTGGATGGAGCTTAGGTGAGCCAAGTTCTAGTAATACCCAGAGTGAAACCAACAATAATCAGCAGAAAAGAGAACTTGGATGGACATCTCCAATTAGTGCAAATGCTGCAGATGGTCCAAGAGCAGAAGGGAGGTGCTTTGAACCATCGATTGTTCTTTCGGCTGACAATGTCAATCCCAGTCCTGTGTATATGCACAACTCCAATTCTCACAGGCCACCGGATATCAACTTAAATGCTGGCTTGGCAGATGGTAGTGGTGATAACAGCCAGCATTTGGAGCATCCTAACTTGCACAAATCTAGTGGATCAGTAAATGAGCGTGTTCCACCTAGCATTGTTTCTGGTCCTTTTCCTCCTCCTCCTGGAAATAACAACTTCGTTCTAGAAGGCACTGATACTAGGGCCAGCTGTTCTCTAGACGTGCGTCGTGCGTCTTGTAAAAGGAAGGCCATTGAAGAAAATGTTGGACCATCTTTGGACAGTGGAAGTTCTAGTTCTAGTCAGCATTTAGAAAGTAGTGCTTGGAACCCTCTTCCAACTCAGGTTAATGGTGGGAGAAGTTTAAGTAGATCTGCTTCATCTGAACAGGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCCCCTGAAAACCTTCCCGATTCAAATGATGTAGGGAGAACAGGAAGCTTCCACAGGAATCTCCGTTTGAGGATAAGTCCTTCAAGTCAACAAGATTCAATTCCTCCCCCTGCATTCTCTACTGGGAGCGTGATTAGGCATTCTAGTATGTCAACCTCTTCAATGTCGCAAAGGTTCCCACCTGTTGATAACTCCTTGGACTTGAGGGCAGCACCAATGGTAGGTAATGTAATTCCTCAAAGCCGGCCCCTTGTGATCCATGTTCCTGCTTTACCAAGGAATTTGCAATCATTAAGATGGAATGGTAGTTCTAGCTCAAGCAACAGCCAATCATCAAGCCCACTCCTTTGTGCAGACAGGGATAACCAGCCCCGGGAAGAATCAAACTCAAGAAGTATTTCTAGAAACATTTTTGATCACCCGGTGTTTGTACCTGCAACTGAGTTAAGAAATCTTGTTCGAAATCCAACAATTAGAGCTTCAGTATTGAAGGATGGGGATGAGCTCCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGTGGCCTGCGATTTGAGGATGTTATGATTCTTGACCAATCGGTCTTTTCTGGAATGGCTGATATTCATGATCGCCACAGGGATATGCGTCTTGATGTTGATAACATGTCGTATGAGGAATTGCTGGCTCTGGAAGAGCGAATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACCATAATGAGACTTCTGAAACAGAAGAAGCACTCAGTTGAAACAGGATCTCAGGTTGAGGCAGAACCGTGCTGTGTCTGTCAGGAGGAGTATAATGACGGAGATGATATTGGAACCCTTGATTGCGGGCATGATTACCACAAAGAATGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCGTTTATGGAGGTGAAAAGAATTGGCACAATGACCTTAGAAAGAAACTCAGGTTAATTGAAGCGGAATTCTCTGGTGCTTTGTTGCCTTGTCTTCTATCTATAGGGGCTGGTAATTGGTGTTGGGTGAAGGAAGCATTATTCGTCTTATTCTAG 1998 0.4414 MLTLLTDVALVSCFTVEVLNTYSPALFRASFSAAPMQGQRGAIGSLPETLEFNCGSTSSNPTVDQQICWNNMRNPADNNGDIPEYLLPLSDMNPPYMNSINHEWQNSSGWSLGEPSSSNTQSETNNNQQKRELGWTSPISANAADGPRAEGRCFEPSIVLSADNVNPSPVYMHNSNSHRPPDINLNAGLADGSGDNSQHLEHPNLHKSSGSVNERVPPSIVSGPFPPPPGNNNFVLEGTDTRASCSLDVRRASCKRKAIEENVGPSLDSGSSSSSQHLESSAWNPLPTQVNGGRSLSRSASSEQVNARLGLGMGDEAPENLPDSNDVGRTGSFHRNLRLRISPSSQQDSIPPPAFSTGSVIRHSSMSTSSMSQRFPPVDNSLDLRAAPMVGNVIPQSRPLVIHVPALPRNLQSLRWNGSSSSSNSQSSSPLLCADRDNQPREESNSRSISRNIFDHPVFVPATELRNLVRNPTIRASVLKDGDELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETIMRLLKQKKHSVETGSQVEAEPCCVCQEEYNDGDDIGTLDCGHDYHKECIKQWLMHKNLCPVYGGEKNWHNDLRKKLRLIEAEFSGALLPCLLSIGAGNWCWVKEALFVLF 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0873 665 MobiDBLite consensus disorder prediction 325 375 - -
Lele25g0873 665 MobiDBLite consensus disorder prediction 265 306 - -
Lele25g0873 665 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 250 616 IPR045191 GO:0061630
Lele25g0873 665 MobiDBLite consensus disorder prediction 169 237 - -
Lele25g0873 665 CDD RING-H2_TTC3 576 615 - -
Lele25g0873 665 SMART ring_2 577 617 IPR001841 -
Lele25g0873 665 MobiDBLite consensus disorder prediction 263 375 - -
Lele25g0873 665 MobiDBLite consensus disorder prediction 415 434 - -
Lele25g0873 665 ProSiteProfiles Zinc finger RING-type profile. 577 616 IPR001841 -
Lele25g0873 665 SUPERFAMILY RING/U-box 576 616 - -
Lele25g0873 665 MobiDBLite consensus disorder prediction 107 148 - -
Lele25g0873 665 MobiDBLite consensus disorder prediction 415 448 - -
Lele25g0873 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 540 620 IPR013083 -
Lele25g0873 665 FunFam E3 ubiquitin-protein ligase MBR2 545 621 - -
Lele25g0873 665 Pfam Ring finger domain 577 616 IPR001841 -
Lele25g0873 665 MobiDBLite consensus disorder prediction 190 216 - -
Lele25g0873 665 MobiDBLite consensus disorder prediction 107 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0873 Lele-ChrLele25 5585800 5590462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0873 484 616 C3H Transcription Factor Family AT2G15530 64.234 9.07e-57 203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0873 25 5585800 5590462 Lele01g0846 01 4885758 4890800 CCT
Lele25g0873 25 5585800 5590462 Lele02g0823 02 5018610 5022267 CCT
Lele25g0873 25 5585800 5590462 Lele03g0839 03 4905029 4908464 CCT
Lele25g0873 25 5585800 5590462 Lele04g0844 04 5163602 5167247 CCT
Lele01g0861 01 4969567 4972831 Lele25g0873 25 5585800 5590462 CCT
Lele02g0841 02 5113822 5117121 Lele25g0873 25 5585800 5590462 CCT
Lele03g0856 03 4989269 4992533 Lele25g0873 25 5585800 5590462 CCT
Lele04g0858 04 5247846 5251121 Lele25g0873 25 5585800 5590462 CCT
Lele25g0873 25 5585800 5590462 Lele27g1206 27 19083783 19087627 hybridization
Lele25g0873 25 5585800 5590462 Lele28g0866 28 5582052 5586724 hybridization