Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0865 ATGTTTATGTATGAAGGCGTAAAGTCAAAGAAGGACCAAAAATTAAAAACGTTGAAATTAAGCAGCAGATGCAAAGGATGTGGCGTAGGGCAAGTTGAACCGGAACGCAGAGGGAGGGAACAAAAGAACTCTTTTGAGAGTAATGGTAATGATGATGACCGTAAGGGCATTCATGGAAGAATGAGAAAGTTTGCTTACAAAAAGGACGTGTCATTCATGCGTCAGCCCGACGCCTCTGGTCTTTTTTGGGCATTTAATGAACAGAAAATGGAGAAGGGAAGAAAGCATATGCATGGATGGAGTATTGATGTGTCAGGGTTTGTTGGTCATAATGTTCTTGAGCGTGCCCGCTGCTTTCAATTAGGAGGCCTAAGGCTGCCATCTGCCATGCAAGGTTTACTACCTAATGATTCAAGGCGATGGCCCAGAATATTGTTCTTAGATGGGCTTGATTTCAATGGCCGCTGTAATTTTCTTTCCTTTGTCATGTGGACGACATCAGGGTGGGTCTGGTTGCCGTCAAGTGGTGAAGTGGTGAGTGCAAGTTGCAGGGTTTCTTCAGTCTTGACCATTTCACGGCCAATTCATGCATCTTTACTGGTTAAGTATAATGGGCTGATGAAAAAGGAGAGGGGCGGGAGACGAAAGAGTATTTTGTTTTATTATAATTGGAATGTTATACATGTAGGGAATATTCGCAATTCTTTCGTTCAAAAATTGAAGCAACTTAACCAAGGGAGAGAAAGATATAGGTTTGATTGCTACCATAAAAGTCGGTGGGTAGGTAAAGTAATTAACATGGAAGAAAGAGACTGTTGTTTGAGGGATTCGACGATCACGACGAGCAGAAGCAGCCCAGAGAAGCGGAAGCCACAGAGGCAACACCACAAAGCGGCAAAGGACAAGCCATACAGAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATCAGAGAACCCAACAAGAGGTCAAGGATTTGGCTCGGTTCTTACACCACACCCATCGCCGCCGCACGCGCATACGACACCGCCGTTTATTACCTCCGAGGCCCTTCTGCCTCCCTCAACTTCCCCGAACAGTTGTTCCAAGACGACAACGCCCTCACCCGCGGCGACATGTCCGCCGATTCCATACGCAAGAAAGCTACCGAAGTCGGCGCCAGAGTCGACGCCCTCCAAACCGCCCTCCAGTCCTCCTCTCCCTCCACCAGTTCTAACCAAACCACCTTCGACAAACCCGACTTGAACGAGTACCCGCAACCCGAAGACTCCGTCGAGGATTAG 1290 0.4775 MFMYEGVKSKKDQKLKTLKLSSRCKGCGVGQVEPERRGREQKNSFESNGNDDDRKGIHGRMRKFAYKKDVSFMRQPDASGLFWAFNEQKMEKGRKHMHGWSIDVSGFVGHNVLERARCFQLGGLRLPSAMQGLLPNDSRRWPRILFLDGLDFNGRCNFLSFVMWTTSGWVWLPSSGEVVSASCRVSSVLTISRPIHASLLVKYNGLMKKERGGRRKSILFYYNWNVIHVGNIRNSFVQKLKQLNQGRERYRFDCYHKSRWVGKVINMEERDCCLRDSTITTSRSSPEKRKPQRQHHKAAKDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVYYLRGPSASLNFPEQLFQDDNALTRGDMSADSIRKKATEVGARVDALQTALQSSSPSTSSNQTTFDKPDLNEYPQPEDSVED 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0865 429 MobiDBLite consensus disorder prediction 396 416 - -
Lele25g0865 429 PRINTS Ethylene responsive element binding protein signature 304 315 IPR001471 GO:0003700|GO:0006355
Lele25g0865 429 PRINTS Ethylene responsive element binding protein signature 342 362 IPR001471 GO:0003700|GO:0006355
Lele25g0865 429 CDD AP2 304 362 IPR001471 GO:0003700|GO:0006355
Lele25g0865 429 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 286 426 - -
Lele25g0865 429 MobiDBLite consensus disorder prediction 26 58 - -
Lele25g0865 429 SMART rav1_2 303 366 IPR001471 GO:0003700|GO:0006355
Lele25g0865 429 Pfam AP2 domain 304 352 IPR001471 GO:0003700|GO:0006355
Lele25g0865 429 FunFam Ethylene-responsive transcription factor 2 302 361 - -
Lele25g0865 429 Gene3D AP2/ERF domain 303 362 IPR036955 GO:0003700|GO:0006355
Lele25g0865 429 SUPERFAMILY DNA-binding domain 303 361 IPR016177 GO:0003677
Lele25g0865 429 MobiDBLite consensus disorder prediction 279 302 - -
Lele25g0865 429 MobiDBLite consensus disorder prediction 30 58 - -
Lele25g0865 429 ProSiteProfiles AP2/ERF domain profile. 303 360 IPR001471 GO:0003700|GO:0006355
Lele25g0865 429 MobiDBLite consensus disorder prediction 396 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0865 Lele-ChrLele25 5546132 5551790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0865 276 406 AP2-EREBP Transcription Factor Family AT1G46768 62.687 9.76e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele25g0865 AP2 8.5e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0865 25 5546132 5551790 Lele27g1212 27 19131403 19131894 hybridization
Lele25g0865 25 5546132 5551790 Lele28g0859 28 5537067 5537558 hybridization