Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0830 ATGGCTCTGGAAGCTCTCAAGTCACCCACCGCCGCTCCTCCTTCCTTCCATTTCGAATTGGACTCCAATCCTCATTCCTTGGAGTCATGGACTAAGCGCAAACGTTCCAAGCGTCCCCGTCTCGACAATCCTTCCTCATGCACTTCCGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGTGGCTCCCCTCAGGATAATCTTCCCCCGGCTGCGTCTGAGTCGGCGCCGCTATCCACACCAGATCCAACCCCCGCCCCCAAGCTTAGTTACAAGTGCTCTGTTTGCGACAAGGCTTTCTCCTCTTACCAGGCTCTCGGAGGACACAAGGCCAGTCACAGAAAACTCTCTGCGGGCGGCCCTCCTGGGGAAGATCAATCCACCTCCTCCGCCGTCACAAGTACTTCTGCAAACACCGCCACAACTGCGTCCAGCGCGGGGGGTAAGTCCCACGAGTGTTCTATCTGCCACAAGTCCTTCCCCACCGGACAAGCCCTGGGAGGTCACAAGCGCTGTCACTACGACGCTGGTGCTGCGGCTGCCGCTACCGCTGGCGGTGGGAGCAGCGCTGTCACTGCCTCGGAAGGAGTTGGATCCACCCATACCGTTACCCACAGCCAACGTGACTTCGACCTGAACCTTCCCGCTTTGCCCGACTTCTCGGCCAAGGTCTTCGCTCATGGGGACGACGAAGTGGAGAGCCCTTTGCCGGTGAAGAAACCGCGTCTTTTGATGGCGCCCAAAATCGAAGCAGCTCACTGA 771 0.5888 MALEALKSPTAAPPSFHFELDSNPHSLESWTKRKRSKRPRLDNPSSCTSEEEYLALCLIMLARGGSPQDNLPPAASESAPLSTPDPTPAPKLSYKCSVCDKAFSSYQALGGHKASHRKLSAGGPPGEDQSTSSAVTSTSANTATTASSAGGKSHECSICHKSFPTGQALGGHKRCHYDAGAAAAATAGGGSSAVTASEGVGSTHTVTHSQRDFDLNLPALPDFSAKVFAHGDDEVESPLPVKKPRLLMAPKIEAAH 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0830 256 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Lele25g0830 256 MobiDBLite consensus disorder prediction 125 152 - -
Lele25g0830 256 SMART c2h2final6 154 176 IPR013087 -
Lele25g0830 256 SMART c2h2final6 94 116 IPR013087 -
Lele25g0830 256 MobiDBLite consensus disorder prediction 114 154 - -
Lele25g0830 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Lele25g0830 256 SUPERFAMILY beta-beta-alpha zinc fingers 94 176 IPR036236 -
Lele25g0830 256 MobiDBLite consensus disorder prediction 66 87 - -
Lele25g0830 256 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 31 221 IPR044653 GO:0003700
Lele25g0830 256 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Lele25g0830 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Lele25g0830 256 MobiDBLite consensus disorder prediction 1 48 - -
Lele25g0830 256 Gene3D Classic Zinc Finger 92 176 - -
Lele25g0830 256 Pfam C2H2-type zinc finger 154 178 - -
Lele25g0830 256 Pfam C2H2-type zinc finger 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0830 Lele-ChrLele25 5346929 5347699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0830 1 253 C2H2 Transcription Factor Family AT1G27730 52.107 2.13e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele25g0830 zf-C2H2_6 1.3e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0830 25 5346929 5347699 Lele27g1249 27 19335923 19336738 hybridization
Lele25g0830 25 5346929 5347699 Lele28g0827 28 5336883 5337686 hybridization