Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0824 ATGGGGACGGAGAGTCCAGTGAATTTCACATACATGGGAAGGAGTATTAGCGAATTGAGCATCAATGATCATTCTTCTTCTGCTTTCAGCGATTGCAACAGTGACAGATCCGGTGAATTCCCGACAGCTTCTTCCCAGAGCCGGCACCTCCTGATTGCTTGTGCGTCCGACAATTCCGATGATTTTATTGCTCAGCTGGTGAACGATCTCCAGTCTTCTTCGATTGATGACCAGAAGCAAGCCGCCATGGAGATTAGACTGCTGGCCAAGAACAAACCCGAAAACCGGCTTAAGATCGCCAAAGCCGGCGCTATTAAGCCGTTGATTTCGCTCATGTCTTCGCCTGAACTTCAACTCCAAGAGTACGGTGTCACGACGATTTTGAATCTCTCACTGTGCGATGAGAACAAGGAGCTTATAGTTTCTTCGGGAGCGATAAAGCCTCTGGTTCGAGCACTCAAGAAAGGGACATCAACGGCAAAAGAGAACGCGGCATGTGCTCTGCTTCGCCTTTCGCATATAGAACAGAACAAGGTCGCAATCGGAAGGTCGGCAGCCATTCCGCTGCTAGTGAACCTTCTAGAGAGCGGTAGTTTCCGAGGGAAAAAGGACGCCTCGACGGCTCTGTATTCCCTCTGTTCGGTGAAGGAGAATAAAATAAGGGCGGTGCAAGCCGGGATAATGAAGCCGTTAGTGGAATTAATGGCTGATTTTGGGTCCAACATGGTGGATAAATCAGCATACGTGCTGAGCGAGTTGGTGTCGGTGCCGGAGGCGAGAACGGCGTTAGTGGAGGAAGGAGGAATTCCGGTGGTGGTGGAAATCCTAGAGGTGGGGTCGCAGAGACAGAAGCAAATATCTGTGGTTATACTATTACAGATTTGCGAGGACAACGCGACCTACCGCACTATGGTGGCTCGCGAAGGAGCGATACCGCCGTTGGTTGCTCTGTCGCAGTCCGGCGCCCCCAACTCCAAGCATAAGGCGGAGACACTAATAGAGCTTCTACGGCAACCAAGATCCGGCGCCGCCGCTGATCGTGCGTTGGAGGTCTCAGCCTAA 1062 0.5169 MGTESPVNFTYMGRSISELSINDHSSSAFSDCNSDRSGEFPTASSQSRHLLIACASDNSDDFIAQLVNDLQSSSIDDQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLMSSPELQLQEYGVTTILNLSLCDENKELIVSSGAIKPLVRALKKGTSTAKENAACALLRLSHIEQNKVAIGRSAAIPLLVNLLESGSFRGKKDASTALYSLCSVKENKIRAVQAGIMKPLVELMADFGSNMVDKSAYVLSELVSVPEARTALVEEGGIPVVVEILEVGSQRQKQISVVILLQICEDNATYRTMVAREGAIPPLVALSQSGAPNSKHKAETLIELLRQPRSGAAADRALEVSA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0824 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Lele25g0824 353 Gene3D - 174 336 IPR011989 -
Lele25g0824 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 226 268 IPR000225 GO:0005515
Lele25g0824 353 SMART arm_5 174 214 IPR000225 GO:0005515
Lele25g0824 353 SMART arm_5 298 338 IPR000225 GO:0005515
Lele25g0824 353 SMART arm_5 92 132 IPR000225 GO:0005515
Lele25g0824 353 SMART arm_5 215 255 IPR000225 GO:0005515
Lele25g0824 353 SMART arm_5 256 296 IPR000225 GO:0005515
Lele25g0824 353 SMART arm_5 133 173 IPR000225 GO:0005515
Lele25g0824 353 PANTHER U BOX DOMAIN-CONTAINING 63 337 - -
Lele25g0824 353 FunFam RING-type E3 ubiquitin transferase 52 342 - -
Lele25g0824 353 SUPERFAMILY ARM repeat 60 333 IPR016024 -
Lele25g0824 353 Gene3D - 40 173 IPR011989 -
Lele25g0824 353 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Lele25g0824 353 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Lele25g0824 353 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0824 Lele-ChrLele25 5313055 5314453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0824 63 345 U-box Gene Family AT2G23140 48.057 1.34e-82 261