Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0818 ATGTTGTGTGCTTGCTCCGGGGAGCAATTCAAATTCGAAGAGCCGCCACAGTCGCCGGAATCCCTCGCAACAAGAGATTTCTCGGCCAGTGGACTCTCTTCGAGGACAGGGGATTGGGAATCTAAATTTGATGACACCCAAGTAGATGAAGCTGAATCTATTCTTAAAGAAGCTCTCTCCTTGAACTACGAGGAAGCTAGGGCTTTGTTGGGGAGGCTTGAATTCCAAAGGGGGAATTTCGATGCTGCCCTACAAGTATTTCAAGGGATTGACATTAAGGGTTTGACTCCGAGGATGATTAGGGCCATTTCTGAGAGAACCAAGCAAAGAAAACCACGTTCTAAGGCCGATCACGTGCTCCCCTGCATAATGTCAATGCATTCAGTAAGCCTACTTCTTGAGGCTATTCTGCTTAAAACTAAATCATTGGAGGCACTCGCACGCTACACTGAGGCTGCAAAGGAATGCAAAATAATTCTGGACACGGTTGATTCTGCGCTACCAGCTGGAATGCCTCAAGGTTTTGGCGAAGATTGTAAACTGCAAGAAATGTTCCACCGAGCATTGGAGTTGCTTCCTAAACTTTGGACTAGTGCGGGCTTACTGGATGAAGCTATCACTGCATATCGGCGGGCTCTGATCAAGCCGTGGAATTTGGAGCAACAAAGGCTGGCCACCGTGCAGAAAGATTTAGCTGTTACCCTTCTTTATGGTGGTGTTGAAATAGGCCTTTCATCTCATTTGCATGTGTGGGGTGTAACAACGCCGAACACTAACATTGAAGAAGCTGTATTGTTGCTACTAATACTCATGAGAAAGATAGCACTTCAGGAAATCGAATGGGATTCTGAACTATTGGATCATCTTACATTTGCACTTTCAATTACGGGGATGTTTGAATTATTGGCCGATCATTTTGAGCAGATCCTTCCAGGTGTTTATAGTCGTGCTGAGAGGTGGTACTTTCTTGCCCTTTGTTATAGTGCTGCAGGACAGAATGAAACAGCATTGAACCTTCTAATGAAAGCTTGTGGTAGTTCTGAGGCCAATCATATACCCCATTTTCCTTCCTTTTTATTTGGAGCAAAACTATGTTCCCAAGATCACAACCATGCCCATGAAGGCATTAAATTATCACGGAAAGTGATTGATCTAGCCAAGCATCAATGTGGGCACTTTCAGGTTCAAGGTCACAGATTTCTTGGTGTTTGCTATGGGGCCGCGGCTAGAATTTCTCTACTGGATTCTGAAAGAGTTATATGTCAAAGAGAGTCTTTGAATTCCTTAAACCAAGCTGCTGTAATTGGAAATTGGGACCCCGAAGTGATATTCAGCCTTGGATTGGAAAATGCAGTTCAAAGAAATTTGGGGGCAGCTTATGAGAACGGAGTGATGTACTCAGATATGATTGTTGGTAGCTCAGGAAAAGGTTGGCAACTGTTAGCGCTCATAGTATCTGCACAGCAACGGTTCAAGGATGCTGAGACTGTTGTTGATTTTGCTTTAGATGAATCTGGAAGGACGGATCAGTTACAACTTTTAAGATTGAAAGCCGTGCTTCAAATTACTCAGCAGCAACCTAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCGCTGATTCAAGCGCGAAAGGACTTTTGGCTTGAATATAAGAACATCGATCCCGCAAACACGTTGAGACATGAGGAATTAACAGAAAAAAAATTGGAAATGGAAGCCTGGCAGGATTTGGCAACCATTTATGCCGATCTAGGTGCCTTGCTAGATGCAAAAACTTGTTTAGACAAATCCCAGTTGATAGAATTCTTTTCTCCCAGAAGTTGGCATATTACAGGGGAACTGTTTGAAGCTAAATCATTGTACAAGGAGGCCATTGTTTCTTTCACAATTGCTTTGTCGATAGAACCAGATTATGTTCCCAGCATCATTTCAACTGCAGAATTGTTGTTAAAAGCTGGTATGAAATCACTTCCAATCGCTAGAAGCTTTTTAATGAATGCTCTGCGGTTGGAACCCACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTGCAGCAAGCGGCAGATTTCTTCCAAGCTGCATATGAGCTAAAGTTTTCAGCTCCAGTAGAAAGATTTGTGGGAGTAATTGAGACTTCGAGATGA 2169 0.432 MLCACSGEQFKFEEPPQSPESLATRDFSASGLSSRTGDWESKFDDTQVDEAESILKEALSLNYEEARALLGRLEFQRGNFDAALQVFQGIDIKGLTPRMIRAISERTKQRKPRSKADHVLPCIMSMHSVSLLLEAILLKTKSLEALARYTEAAKECKIILDTVDSALPAGMPQGFGEDCKLQEMFHRALELLPKLWTSAGLLDEAITAYRRALIKPWNLEQQRLATVQKDLAVTLLYGGVEIGLSSHLHVWGVTTPNTNIEEAVLLLLILMRKIALQEIEWDSELLDHLTFALSITGMFELLADHFEQILPGVYSRAERWYFLALCYSAAGQNETALNLLMKACGSSEANHIPHFPSFLFGAKLCSQDHNHAHEGIKLSRKVIDLAKHQCGHFQVQGHRFLGVCYGAAARISLLDSERVICQRESLNSLNQAAVIGNWDPEVIFSLGLENAVQRNLGAAYENGVMYSDMIVGSSGKGWQLLALIVSAQQRFKDAETVVDFALDESGRTDQLQLLRLKAVLQITQQQPKQAIETYRILLALIQARKDFWLEYKNIDPANTLRHEELTEKKLEMEAWQDLATIYADLGALLDAKTCLDKSQLIEFFSPRSWHITGELFEAKSLYKEAIVSFTIALSIEPDYVPSIISTAELLLKAGMKSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADFFQAAYELKFSAPVERFVGVIETSR 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0818 722 Gene3D Tetratricopeptide repeat domain 553 658 IPR011990 GO:0005515
Lele25g0818 722 Gene3D Tetratricopeptide repeat domain 659 711 IPR011990 GO:0005515
Lele25g0818 722 Pfam Tetratricopeptide repeat 46 89 - -
Lele25g0818 722 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Lele25g0818 722 Gene3D Tetratricopeptide repeat domain 33 239 IPR011990 GO:0005515
Lele25g0818 722 Pfam Tetratricopeptide repeat 317 349 IPR019734 GO:0005515
Lele25g0818 722 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Lele25g0818 722 SUPERFAMILY TPR-like 47 339 IPR011990 GO:0005515
Lele25g0818 722 SUPERFAMILY TPR-like 316 543 IPR011990 GO:0005515
Lele25g0818 722 Gene3D Tetratricopeptide repeat domain 259 541 IPR011990 GO:0005515
Lele25g0818 722 MobiDBLite consensus disorder prediction 21 37 - -
Lele25g0818 722 MobiDBLite consensus disorder prediction 11 38 - -
Lele25g0818 722 SMART tpr_5 317 350 IPR019734 GO:0005515
Lele25g0818 722 SMART tpr_5 511 544 IPR019734 GO:0005515
Lele25g0818 722 SMART tpr_5 572 605 IPR019734 GO:0005515
Lele25g0818 722 SMART tpr_5 676 709 IPR019734 GO:0005515
Lele25g0818 722 SMART tpr_5 606 639 IPR019734 GO:0005515
Lele25g0818 722 SUPERFAMILY TPR-like 567 706 IPR011990 GO:0005515
Lele25g0818 722 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0818 Lele-ChrLele25 5264909 5267669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0818 1 715 Calmodulin-binding Proteins AT1G27460 59.388 0.0 858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0815 01 4720555 4731244 Lele25g0818 25 5264909 5267669 CCT
Lele02g0786 02 4807814 4811707 Lele25g0818 25 5264909 5267669 CCT
Lele03g0805 03 4720593 4724580 Lele25g0818 25 5264909 5267669 CCT
Lele04g0804 04 4941508 4951984 Lele25g0818 25 5264909 5267669 CCT
Lele25g0818 25 5264909 5267669 Lele27g1260 27 19419739 19423376 hybridization
Lele25g0818 25 5264909 5267669 Lele28g0815 28 5238473 5241785 hybridization