Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0816 ATGAGAGCAGGCCAGCCGACAGTTGCCCATTTGGAGATATGGGACCTCCCAATCACAAAGTGGCTTTCCAAAGCAATACGTATTTTTTTACTCTCACTTGGTACTTGTCTGCTTTTGGTCTCCGCAATTATCTGCAGGACAGATTTGCCATTCTCTTTTTCTCAGATCATCATCTTCATTGATCTGTTGAAACAGAAACTCAAAACATTCAGACAATCATCTGCTTGCTTCTACTTACTGGGATTGGATCTGGTGTCTAACGTTGATCCTCTGAATAAGCAGATAGGTTTATTAGAATCATCACAGCGAGTTACACCATATTTTGCACTTCAATTCAATTCTTTGGTTTACAAGATGACAGTTTTTGTAAGTTTATCAATTGATCAATGTATTTTGCAGCTAAGCAACTACAATTCTTTTGAGGGAGTTCTTTATTGCAAGCCCCACTTCGACCAAATTTTCAAAAGAACTGGCAGTCTCGACAAAAGCTTCGAAGGGACACCAAAAATTGCAAAACCAGAGAAACAAATTGACACTGAGAAACCTGCAGTAACCAAAGCCTCAAGTATGTTTGGTGGTACCAGAGATAAATGCACTGGTTGTCAGAAAACAGTTTACCCAACTGAGAAGGTTACTGTAAATGGAACACCTTACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATAAGTCCTTCGAACTACATCGCGCACGAGGGTAAACTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAGCTTGAAGACCATGACAAGAGTGAAACGAATGACAAGATCATCAATGGGGAAGAAGTTGCTGCCTAG 852 0.4085 MRAGQPTVAHLEIWDLPITKWLSKAIRIFLLSLGTCLLLVSAIICRTDLPFSFSQIIIFIDLLKQKLKTFRQSSACFYLLGLDLVSNVDPLNKQIGLLESSQRVTPYFALQFNSLVYKMTVFVSLSIDQCILQLSNYNSFEGVLYCKPHFDQIFKRTGSLDKSFEGTPKIAKPEKQIDTEKPAVTKASSMFGGTRDKCTGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEDHDKSETNDKIINGEEVAA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0816 283 Pfam LIM domain 198 252 IPR001781 -
Lele25g0816 283 Coils Coil 276 283 - -
Lele25g0816 283 FunFam LIM domain and actin-binding 1 192 262 - -
Lele25g0816 283 PANTHER OS06G0237300 PROTEIN 129 182 IPR045268 -
Lele25g0816 283 MobiDBLite consensus disorder prediction 262 283 - -
Lele25g0816 283 CDD LIM2_SF3 198 258 - -
Lele25g0816 283 Gene3D Cysteine Rich Protein 193 262 - -
Lele25g0816 283 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 190 223 - -
Lele25g0816 283 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 263 - -
Lele25g0816 283 SMART lim_4 197 249 IPR001781 -
Lele25g0816 283 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 129 164 - -
Lele25g0816 283 ProSiteProfiles LIM domain profile. 196 256 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0816 Lele-ChrLele25 5254527 5256773 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele25g0816 LIM 7.6e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0816 25 5254527 5256773 Lele01g0804 01 4664450 4665773 CCT
Lele25g0816 25 5254527 5256773 Lele03g0797 03 4665025 4666476 CCT
Lele25g0816 25 5254527 5256773 Lele04g0797 04 4886545 4887950 CCT
Lele25g0816 25 5254527 5256773 Lele27g1262 27 19436313 19438919 hybridization
Lele25g0816 25 5254527 5256773 Lele28g0813 28 5226086 5228907 hybridization