Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0801 ATGCTCACTTTCTCTTCTCCCAAATCGGAGTCTCAGTTAACGGACAAGGCCTCCCCGAATGCCGCATTGCCCTTTCCGTATCAGCAACTAGCCGCTTACACCAGGAATACAGGTTACGGCTCTGGAGGCATGCACGGGGTTTTAACAACATCCAGAGGGCTATTCACTCCGTCGCAGTGGATGGAGCTGGAACACCAGGCCCTGATCTACAAGTACATCACTGCAAATATGGCCGTACCTTCTCATCTCCTCATCCCTATCAGAAAAGCTATCGATTCTGCTGGCTTCAGTAACTTTTCCAACGGACTTCTCACACCCAATGCACTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACTGATCCTGAACCGGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCAAGAGATGCCGTTGTGGATCAGAAGTACTGTGAGCGCCACATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCTCTGGCGCCACCACTACCAATAATGCCTCAAAGCTCGTCCCTAATGCTTCCTCCTCTGCCTCAGTAGTGGTGCCAGGCAATGCTGCTACCAGCACCCTTTCCTTTGCCCATCATCAATCCAAGAATTTGCAGCCTCTTTCATCTCATACATCTGTTCCAACCAACATCGACAGAATGTTTATGAACAACAAGGAGAATGCTAATGAGAGAGTGCAGGACGGTTCTGCCCTTCCGATGCTGCCTCCCACCCTTGATCTGAAGCCCAAGGAAAACCCTTTTATGATACAAAAGGAGCAAATCCCATACCAAGAATCGTCAAGGAATGAATTTGGGTTTGTCACTTCTGACTCTCTACTCAACCCTTCTCATAGAAGCTTTGGTTCTTCACAGAACCCCTCTTTCAGAGACACTGAGTCACAGCAATCCCTTCGTGATTTTATGGATGACTGGCCCAAACTTGACATGCAATCAGATAGGACCCAGCTTTCAATATCTATCCCCATGGCCTCCTCAAATTTCATGCCATCCACTTCCTCTCCGACCAATGAAAAAGTCACATTGTCACCTCTTAGACTATCCAGGGAGCTAGATCCAATTCAAATGGGTTTGGGGGTGGGAATTGGTCTGAATGAATTAAGTAATAGGCAGGCAAATTGGATTCCAATTGCTTGGGAAAGTTCCATGGGAGGTCCTCTTGGCGAGGTTCTTCATCTTAGTAACAACACAAGTGACTGCTCCAAGAACTCGTCCGCTCTCAACCTCATGACAGATGGGTGGGAAAATAGTTCATCCTTAGGTTCATCTCCTACGGGAGTCTTGCATCAGACTGCGTTTGGATCAGTTTCCAATTGCAACTCAGGGAGCAGTCCGGTGGCTGATAATAATAAAGGACTCGAAGGGGCCAGCTTGTGCAATGACCTGCTCGGTTCCTCTCTTGCCAATTCCTCCTCTTTGACCAACTTGTAA 1485 0.4862 MLTFSSPKSESQLTDKASPNAALPFPYQQLAAYTRNTGYGSGGMHGVLTTSRGLFTPSQWMELEHQALIYKYITANMAVPSHLLIPIRKAIDSAGFSNFSNGLLTPNALGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVSGATTTNNASKLVPNASSSASVVVPGNAATSTLSFAHHQSKNLQPLSSHTSVPTNIDRMFMNNKENANERVQDGSALPMLPPTLDLKPKENPFMIQKEQIPYQESSRNEFGFVTSDSLLNPSHRSFGSSQNPSFRDTESQQSLRDFMDDWPKLDMQSDRTQLSISIPMASSNFMPSTSSPTNEKVTLSPLRLSRELDPIQMGLGVGIGLNELSNRQANWIPIAWESSMGGPLGEVLHLSNNTSDCSKNSSALNLMTDGWENSSSLGSSPTGVLHQTAFGSVSNCNSGSSPVADNNKGLEGASLCNDLLGSSLANSSSLTNL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0801 494 ProSiteProfiles WRC domain profile. 123 167 IPR014977 -
Lele25g0801 494 SMART QLQ_2 53 89 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele25g0801 494 ProSiteProfiles QLQ domain profile. 54 89 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele25g0801 494 MobiDBLite consensus disorder prediction 152 186 - -
Lele25g0801 494 MobiDBLite consensus disorder prediction 171 186 - -
Lele25g0801 494 Pfam WRC 124 166 IPR014977 -
Lele25g0801 494 MobiDBLite consensus disorder prediction 1 18 - -
Lele25g0801 494 Pfam QLQ 55 88 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele25g0801 494 PANTHER GROWTH-REGULATING FACTOR 5 25 345 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lele25g0801 494 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0801 Lele-ChrLele25 5138629 5141464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0801 1 452 GRF Transcription Factor Family AT2G22840 44.915 8.46e-98 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele25g0801 WRC 4.4e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0801 25 5138629 5141464 Lele27g1275 27 19532547 19536170 hybridization
Lele25g0801 25 5138629 5141464 Lele28g0800 28 5136480 5139414 hybridization