Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele25g0800 | ATGGATTCTGATCAAGCCAAGCTGTTTGTGGGTGGCATTTCCCGGGATACTACCGAAGATGTTTTGAAAGACCACTTCGCCAAGTACGGCTCTGTTTTGGGTTCCACTATTTCGGTGGACCGCAACACCAAAATTCCTAGAGGCTTTGGGTTCGTTAGGTTCTCCGACGTTTCGGCGGCTGATAAAGCCCTTCAAGACACGCATGTCATACTCGGAAGAACGGTCCGTTCAACTTCACTTTACCTTTATACTTCTTTTTATCTTTTTCTTCTTTTGCTCGATGGAAGGCTTGAGTCTAGGAATAGAAGAGAAATTCGAGATAAAGTGGAGTTGTGGCAGATGAAAGTGAAGAAAGCAATTCCTAGGTGTGAACATCAACCTCAAAACCTACCCCAGAGTAGAGGGACGAGTAACTTTAGTAATTATGACAGTAGCACCAAAAAGGTTTTTGTAGGAGGCCTATCGGCTGGTATATCGGAGGACGAGTTTAAGAAATATTTCGAGAGATTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCCAGGGGGTTTGGTTTCATAACTTTTGATTCAGAAGAATCTGTTGAAAATGTGATGATGAAGAGCTTCCATGATTTGAATGGTAGACAAGTGGAGGTCAAGAGGGCTGTGCCAAAAGACGGGAATAATGGTTATGATGGTGTTAATAGAATGAGATACAAGAATGGAAGAGGAGCCCCTAAAAGTTCCCCTCAGTATACTCCTAGGTACATTCCCCCTGCGTTTGCCCCTCTTCCCTGGTACGGTGGGGATGGATTGTATTTTTACGGATCTAACATGTATGGTTGCTGGCTCCCTATGGGAGGGTATGGTTGCAATGGATCTGCAGTTCCATTTGATGTTCCTAGGAATTTCTGGTATGGTCCTCCAGTAGCAACTGCTCAGACATGCCAGGTGCCTTATGCTTCTCCAACCCAAGCATATGGGAGTGTTAGGGGTGTACTCGGTACTGAAACAAGGGGCTACAATGGCATCATGGGATCTGCAGCAAGTTTTAAGTTAAATCAGGTTTTCAGTGCCAATGGATTTCTGCCAGCTGATGTCACGTCGTCATCTCCTAAGATTGAAGAGTTGAAGCAGGAAGGGGAGTCTCTAGGTTTGAAAGAAAGCAATGCTGAAGCTTCTAGTTAA | 1188 | 0.4478 | MDSDQAKLFVGGISRDTTEDVLKDHFAKYGSVLGSTISVDRNTKIPRGFGFVRFSDVSAADKALQDTHVILGRTVRSTSLYLYTSFYLFLLLLDGRLESRNRREIRDKVELWQMKVKKAIPRCEHQPQNLPQSRGTSNFSNYDSSTKKVFVGGLSAGISEDEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVENVMMKSFHDLNGRQVEVKRAVPKDGNNGYDGVNRMRYKNGRGAPKSSPQYTPRYIPPAFAPLPWYGGDGLYFYGSNMYGCWLPMGGYGCNGSAVPFDVPRNFWYGPPVATAQTCQVPYASPTQAYGSVRGVLGTETRGYNGIMGSAASFKLNQVFSANGFLPADVTSSSPKIEELKQEGESLGLKESNAEASS | 395 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele25g0800 | 395 | SMART | rrm1_1 | 148 | 220 | IPR000504 | GO:0003723 | |
| Lele25g0800 | 395 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
| Lele25g0800 | 395 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
| Lele25g0800 | 395 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 149 | 214 | IPR000504 | GO:0003723 | |
| Lele25g0800 | 395 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 1 | 346 | - | - | |
| Lele25g0800 | 395 | SUPERFAMILY | RNA-binding domain, RBD | 125 | 244 | IPR035979 | GO:0003676 | |
| Lele25g0800 | 395 | FunFam | Heterogeneous nuclear ribonucleoprotein A2/B1 | 142 | 226 | - | - | |
| Lele25g0800 | 395 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 76 | IPR035979 | GO:0003676 | |
| Lele25g0800 | 395 | Gene3D | - | 1 | 79 | IPR012677 | - | |
| Lele25g0800 | 395 | MobiDBLite | consensus disorder prediction | 223 | 250 | - | - | |
| Lele25g0800 | 395 | Gene3D | - | 111 | 252 | IPR012677 | - | |
| Lele25g0800 | 395 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 76 | IPR000504 | GO:0003723 | |
| Lele25g0800 | 395 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 147 | 224 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele25g0800 | Lele-ChrLele25 | 5127516 | 5128866 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele25g0800 | 8 | 285 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 24.912 | 2.90e-14 | 72.4 |