Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0800 ATGGATTCTGATCAAGCCAAGCTGTTTGTGGGTGGCATTTCCCGGGATACTACCGAAGATGTTTTGAAAGACCACTTCGCCAAGTACGGCTCTGTTTTGGGTTCCACTATTTCGGTGGACCGCAACACCAAAATTCCTAGAGGCTTTGGGTTCGTTAGGTTCTCCGACGTTTCGGCGGCTGATAAAGCCCTTCAAGACACGCATGTCATACTCGGAAGAACGGTCCGTTCAACTTCACTTTACCTTTATACTTCTTTTTATCTTTTTCTTCTTTTGCTCGATGGAAGGCTTGAGTCTAGGAATAGAAGAGAAATTCGAGATAAAGTGGAGTTGTGGCAGATGAAAGTGAAGAAAGCAATTCCTAGGTGTGAACATCAACCTCAAAACCTACCCCAGAGTAGAGGGACGAGTAACTTTAGTAATTATGACAGTAGCACCAAAAAGGTTTTTGTAGGAGGCCTATCGGCTGGTATATCGGAGGACGAGTTTAAGAAATATTTCGAGAGATTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCCAGGGGGTTTGGTTTCATAACTTTTGATTCAGAAGAATCTGTTGAAAATGTGATGATGAAGAGCTTCCATGATTTGAATGGTAGACAAGTGGAGGTCAAGAGGGCTGTGCCAAAAGACGGGAATAATGGTTATGATGGTGTTAATAGAATGAGATACAAGAATGGAAGAGGAGCCCCTAAAAGTTCCCCTCAGTATACTCCTAGGTACATTCCCCCTGCGTTTGCCCCTCTTCCCTGGTACGGTGGGGATGGATTGTATTTTTACGGATCTAACATGTATGGTTGCTGGCTCCCTATGGGAGGGTATGGTTGCAATGGATCTGCAGTTCCATTTGATGTTCCTAGGAATTTCTGGTATGGTCCTCCAGTAGCAACTGCTCAGACATGCCAGGTGCCTTATGCTTCTCCAACCCAAGCATATGGGAGTGTTAGGGGTGTACTCGGTACTGAAACAAGGGGCTACAATGGCATCATGGGATCTGCAGCAAGTTTTAAGTTAAATCAGGTTTTCAGTGCCAATGGATTTCTGCCAGCTGATGTCACGTCGTCATCTCCTAAGATTGAAGAGTTGAAGCAGGAAGGGGAGTCTCTAGGTTTGAAAGAAAGCAATGCTGAAGCTTCTAGTTAA 1188 0.4478 MDSDQAKLFVGGISRDTTEDVLKDHFAKYGSVLGSTISVDRNTKIPRGFGFVRFSDVSAADKALQDTHVILGRTVRSTSLYLYTSFYLFLLLLDGRLESRNRREIRDKVELWQMKVKKAIPRCEHQPQNLPQSRGTSNFSNYDSSTKKVFVGGLSAGISEDEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVENVMMKSFHDLNGRQVEVKRAVPKDGNNGYDGVNRMRYKNGRGAPKSSPQYTPRYIPPAFAPLPWYGGDGLYFYGSNMYGCWLPMGGYGCNGSAVPFDVPRNFWYGPPVATAQTCQVPYASPTQAYGSVRGVLGTETRGYNGIMGSAASFKLNQVFSANGFLPADVTSSSPKIEELKQEGESLGLKESNAEASS 395
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0800 395 SMART rrm1_1 148 220 IPR000504 GO:0003723
Lele25g0800 395 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele25g0800 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lele25g0800 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 214 IPR000504 GO:0003723
Lele25g0800 395 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 346 - -
Lele25g0800 395 SUPERFAMILY RNA-binding domain, RBD 125 244 IPR035979 GO:0003676
Lele25g0800 395 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 142 226 - -
Lele25g0800 395 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Lele25g0800 395 Gene3D - 1 79 IPR012677 -
Lele25g0800 395 MobiDBLite consensus disorder prediction 223 250 - -
Lele25g0800 395 Gene3D - 111 252 IPR012677 -
Lele25g0800 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 76 IPR000504 GO:0003723
Lele25g0800 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 224 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele25g0800 Lele-ChrLele25 5127516 5128866 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0800 8 285 Eukaryotic Initiation Factors Gene Family AT2G36660 24.912 2.90e-14 72.4