Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0795 ATGCGCCTATGTCATGAATGCCTCGTGGTAAAGTGCAACGACAACAAGACAAGAATATGCAAGATTTGGAATTTGATTCCAAAACTACGTTTGAATAACAAGAAAACAAGACGCATTAATTGGAATTCTATCCTAACAGCAGGAGGCAGAAGATCAGTACACTCTTGGTTGGATTGTTTTCTCTGGTTTGCTCGCCTTGGTTGCCCTCTACAATTTGGTTTTTGCCAGGAAGAGCCGTTTGTTTCCTCCGCGGCTTCACCTCAGTGCATGAATAGCATAACCACCACTGCCGGAGGATGCGGATCCATTGACAGCAACGATAATGTCGATGTCATTATCGTAGGAGCTGGTGTTGCTGGCTCTGCTCTGGCGCACACTCTTGGCAAGAAATATGTTGAAATGGCTTTCCAAATGAAACACATTGTGCCAGTCTCTGATAGTATAGTTAACTACGTGATTTCTACTGAACTAAAATCACTGTGTCCTCCTGGTATGGGTTCCGGTAGTTGTGTTTCTGTGCACGGATATGCAATATCAACGAGTGAAATTGATGCTCAGCGAGTGTTTGGTTATGCTCTTTACAAGGATGGAAGAAATACTCGACTCCCTTATCCATTGGAGAAGTTTCACTCAGATGTTTCTGGAAGAAGCTTTCACAATGGACGTTTTATTCAGAGGATGAGGGAGAAGGCTGCCTCCCTTCCCAATGTACAATTGAAGGAAGGAACAGTTACTTCCCTACTTGAAGAGAATGGGAAAATTAAAGGTGTGCATTATAAGACTAAAGATGGCCAAGAATTTTCAGCGTATGCTCCTCTCACCATTGTTTGTGATGGGTGTTTTTCAAACTTGCGCCTTTCTCTTTGTAATCCTAAGGTGGACGTTCCCTCTTGTTTTGTTGGTTTGATATTGGAAAACTGTGAACTTCCGTATGCAAACCATGGCCATGTTATACTAGCAGATCCTTCACCAATTTTGTTCTATCCTATAAGTAGTAAGGAGATTCGCTGTCTGGTTGATGTCCCCGGTCAGAAGGTTCCTTCAATTGCAAATGGTGAAATGACCAAGTATTTGAAGACAGTGGTAGCTCCACAGGTCCCGCCTGAGCTTTATGATGCCTTCATAGCTGCGGTGGACAAAGGCAGTCCACGCTTTGCAAATATCTCGAGTCCTTCTATACCTTGCGGAAGGCGATTAAAATGTCCTGATGATTTGAACTGGCAGCCAGTGGCATCCACCATAAATACGTTGGCGGGAGCCCTATACAAGGTTTTTAGTGCATCTCCTGATAAGGCGAGGAGTGAAATGCGCCAAGCATGTTTTGATTATCTAAGTCTAGGAGGTGTATTCTCGGAAGGGCCAATTTCCTTGCTTTCTGGATTGAACCCCCGCCCCTTGAGCTTGGTTCTCCATTTCTTTGCTGTTGCAATATACGGTGTTGGCCGTTTGTTGATTCCATTTCCGTCGCCCAATCGGGTTTGGATCGGAGCACGATCAATATCTGGTGCTTCAGGAATAATCTTCCCCATAATTAAGGCAGAAGGAGTGCGCCAGATGTTCTTCCCTGGGACCGTCCCAGCTTATTACAGGACAACTCCGTCTAAACCGGAGTGA 1614 0.4473 MRLCHECLVVKCNDNKTRICKIWNLIPKLRLNNKKTRRINWNSILTAGGRRSVHSWLDCFLWFARLGCPLQFGFCQEEPFVSSAASPQCMNSITTTAGGCGSIDSNDNVDVIIVGAGVAGSALAHTLGKKYVEMAFQMKHIVPVSDSIVNYVISTELKSLCPPGMGSGSCVSVHGYAISTSEIDAQRVFGYALYKDGRNTRLPYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNVQLKEGTVTSLLEENGKIKGVHYKTKDGQEFSAYAPLTIVCDGCFSNLRLSLCNPKVDVPSCFVGLILENCELPYANHGHVILADPSPILFYPISSKEIRCLVDVPGQKVPSIANGEMTKYLKTVVAPQVPPELYDAFIAAVDKGSPRFANISSPSIPCGRRLKCPDDLNWQPVASTINTLAGALYKVFSASPDKARSEMRQACFDYLSLGGVFSEGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPNRVWIGARSISGASGIIFPIIKAEGVRQMFFPGTVPAYYRTTPSKPE 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0795 537 Pfam Squalene epoxidase 271 384 IPR013698 GO:0004506|GO:0016020|GO:0050660
Lele25g0795 537 Pfam Squalene epoxidase 409 494 IPR013698 GO:0004506|GO:0016020|GO:0050660
Lele25g0795 537 Gene3D - 105 319 IPR036188 -
Lele25g0795 537 PANTHER SQUALENE MONOOXYGENASE 181 384 IPR040125 GO:0004506|GO:0016126
Lele25g0795 537 SUPERFAMILY FAD/NAD(P)-binding domain 107 300 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0795 Lele-ChrLele25 5077841 5083163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0795 92 537 Miscellaneous Gene Families AT1G58440 59.524 0.0 556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0799 01 4634526 4635833 Lele25g0795 25 5077841 5083163 CCT
Lele02g0771 02 4706746 4708059 Lele25g0795 25 5077841 5083163 CCT
Lele03g0792 03 4631975 4634497 Lele25g0795 25 5077841 5083163 CCT
Lele04g0789 04 4837115 4838428 Lele25g0795 25 5077841 5083163 CCT
Lele25g0795 25 5077841 5083163 Lele27g1281 27 19590751 19595243 hybridization
Lele25g0795 25 5077841 5083163 Lele28g0794 28 5071075 5075986 hybridization