Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0787 ATGGAGGAATATAATAATAATCTGAGCGAAAACAATGGTGGGAGGTCTAATTTCTTGTACTCTTCGGGTGGTATTGGGTACGGAAGAAGTAGCAGCGGTGGGGGTTCGAGTGCTGCTCCCCATCAGTTGCCAATCAATACTTTTCTTCTTCAGTCTGCTGCTTCCGACTGCTTTCACCAATCCGATCAGCCTCATCCCACTGTTAAAACCGAGGCCAATACCTCACACCATGCTCAGATTTTTCAGTATCCTCTTCTCAGAGGAAACCTTCACATGATGCACCACCAAGGAGCAGCAGCTGGAGACAGCTCCAATGAGGTTGAAGCTATCAAGGCTAAAATCATTGCTCATCCTCAGTATTCCAATCTTCTACAAGCTTATATGGATTGCCAAAAGGTGGGAGCTCCACCGGAAGTGGTGGCGCGTCTGGCTGCTACTCGCCAGGAGTTTGAGGCACAGCAGCGATCTTCATCCACTTCCAGGGAAGCTTCGAAGGATCCTGAACTGGACCAGTTCATGGAAGCTTATTATGACATGCTTGTCAAGTATCGAGAGGAATTGACGAGGCCTATCCAAGAAGCCATGGATTTCATGCGCAGGATCGAAACTCAACTCAATATGCTTTGCAATGGATCTGTCCGTATCTTCTCTGATGATAAGTGTGAAGGGGTTGGTTCGTCTGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAATTGCCAGAGATTGATCCCAGAGCTGAAGACCGTGAGCTGAAGAGCCACTTACTGAGAAAGTACAGCGGTTACTTAAGCAGCCTCAAGCAGGAACTGTCCAAGAAAAAGAAGAAAGGAAAACTGCCCAAAGATGCTAGGCAAAAGCTGCTCAACTGGTGGGAATTGCACTACAAATGGCCCTACCCTTCGGAGTCAGAGAAGGTGGCGTTGGCTGAATCGACAGGATTGGACCAGAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTCATGGTGATGGATGGGCTTCATCCACAGAACGCAACTCTCTATATGGATGGTCACTACATGCCTGATGGTCACTACCGTAAGGTGTATCATGTTTCCTCACCGTCAAATCCTGTATCTCAGTATCAGTCTGAATATGATGAAGATGATCTGTATGTCCCTGCCTTCTATACTCGAGCACCTATGAGTCAGGGAAATCGAGGCAATCGACCTCCATGTCAAAATCCGAATCCACATCGAGGTGGAAGACGCTCTGATACTATATCAAAGAATTAG 1293 0.4671 MEEYNNNLSENNGGRSNFLYSSGGIGYGRSSSGGGSSAAPHQLPINTFLLQSAASDCFHQSDQPHPTVKTEANTSHHAQIFQYPLLRGNLHMMHHQGAAAGDSSNEVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVVARLAATRQEFEAQQRSSSTSREASKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGSVRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKSHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMPDGHYRKVYHVSSPSNPVSQYQSEYDEDDLYVPAFYTRAPMSQGNRGNRPPCQNPNPHRGGRRSDTISKN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0787 430 MobiDBLite consensus disorder prediction 220 248 - -
Lele25g0787 430 Pfam ELK domain 251 272 IPR005539 GO:0003677
Lele25g0787 430 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Lele25g0787 430 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981|GO:0006355
Lele25g0787 430 SUPERFAMILY Homeodomain-like 272 346 IPR009057 -
Lele25g0787 430 CDD homeodomain 283 335 IPR001356 GO:0003677
Lele25g0787 430 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 341 - -
Lele25g0787 430 MobiDBLite consensus disorder prediction 396 430 - -
Lele25g0787 430 SMART HOX_1 273 338 IPR001356 GO:0003677
Lele25g0787 430 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
Lele25g0787 430 SMART ELK_2 251 272 IPR005539 GO:0003677
Lele25g0787 430 Gene3D - 276 338 - -
Lele25g0787 430 Pfam KNOX1 domain 109 151 IPR005540 GO:0003677|GO:0005634
Lele25g0787 430 SMART KNOX1_2 108 152 IPR005540 GO:0003677|GO:0005634
Lele25g0787 430 SMART KNOX2_2 159 210 IPR005541 GO:0003677|GO:0005634
Lele25g0787 430 FunFam Homeobox protein knotted-1-like 2 276 338 - -
Lele25g0787 430 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
Lele25g0787 430 Pfam KNOX2 domain 163 209 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0787 Lele-ChrLele25 5019677 5024766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0787 43 366 Homeobox Transcription Factor Family AT4G08150 69.162 1.96e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele25g0787 KNOX2 4.1e-25 No_clan