Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0784 ATGGTGATAGGAAAACTAGCTTGTTTGGTTCCGGACTTTCAGAGTTCTCAGTCCAACTTGCCGGATAATTCAACCATCTCATTGCCCGTTGATGGTTTAGCTATCAACTTACATGGCAATGCCAGTGATTGCTATTATCCACCTTCCATCGATTCCTCCACCGCTCTTCACCCTTTTCTTTCCAATGATCTCACTCCCATGGATTTGGATTCGCTCTGCGAAGATTTCGACGCTTCTTTTGATGCTTTTTCCAGTGATCATTTCCGTATGTACGAGTTTAAGATCCGCAAATGCGCTCGTTCCCGGTCACATGACTGGACGGAGTGTCCGTATGCCCACCCCGGAGAGAAGGCTAGCCGTAGAGACCCTCGGAAATATCAGTACTCCGGCACCGTATGCCCCGAGTATCGCAAAGGTAACTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTGTTCGAATGCTGGCTTCACCCCTCTCGTTACAGAACTCAGTTCTGCAAGGACAAAACAAATTGTCGCCGCCGAGTGTGCTTCTTCGCTCACACTACGGGACAATTGCGGTTCCTAGCCAACGGGTCGGGCGAATCATCGGAGGGGTCTCCGATTTGTCACGCTTCCTTCGTTTCATCACCTACATCAGTACTCCAGCCGTCGCCGATCTCTTCCTTGGCTGAGTCCCCGCTCACATCTCCCGGAAATCCCGGACACGGCTGGAGTGAAATAAGCACCTCAATGTTTAATTTTCAAGGTGATAAGCCGGCTTCAACTCGAGCTCCACGGATGCGCGGTGCGTGCGGTTCACCTCATGGGATCCATATGGGTTCAGCGTTTGGTTTTCTTCGTGTGTCACAGCCCAACATGATCATGTATCAAGATGAAAATACTTTACTTATGTTTATGGATCCACAGCCTCTGCAGACATCAAATACTTCTTTTCAACAAATTCAGGTTTTGCAAAGCTTAAAATCTGTTCCTTTAATTCAAGAACCAGATTCTCCAGAACCTTTTCTTATAACTCAAGAACTAAGTCTTACTAATCAGATCTGA 1053 0.4777 MVIGKLACLVPDFQSSQSNLPDNSTISLPVDGLAINLHGNASDCYYPPSIDSSTALHPFLSNDLTPMDLDSLCEDFDASFDAFSSDHFRMYEFKIRKCARSRSHDWTECPYAHPGEKASRRDPRKYQYSGTVCPEYRKGNCKKGDSCEFAHGVFECWLHPSRYRTQFCKDKTNCRRRVCFFAHTTGQLRFLANGSGESSEGSPICHASFVSSPTSVLQPSPISSLAESPLTSPGNPGHGWSEISTSMFNFQGDKPASTRAPRMRGACGSPHGIHMGSAFGFLRVSQPNMIMYQDENTLLMFMDPQPLQTSNTSFQQIQVLQSLKSVPLIQEPDSPEPFLITQELSLTNQI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0784 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 152 IPR000571 GO:0046872
Lele25g0784 350 Gene3D - 127 190 - -
Lele25g0784 350 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Lele25g0784 350 PANTHER UNKEMPT FAMILY MEMBER 50 276 IPR045234 -
Lele25g0784 350 SUPERFAMILY CCCH zinc finger 127 156 IPR036855 GO:0046872
Lele25g0784 350 SMART c3hfinal6 162 185 IPR000571 GO:0046872
Lele25g0784 350 SMART c3hfinal6 127 153 IPR000571 GO:0046872
Lele25g0784 350 FunFam Zinc finger CCCH domain-containing protein 66 85 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0784 Lele-ChrLele25 4995773 4999027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0784 77 256 C2H2 Transcription Factor Family AT5G12850 50.273 9.49e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele25g0784 zf-CCCH 3.2e-06 CL0537