Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0672 ATGCCATCTGGCCATCCTCGGTTGATTATCATCCAAGGTTCAAGAGATGACTGCACTGGTATAGTGGTCTCTAGTTCATTTCATTTTGTAGCTCTTACTATCAAAATGCAGATGATACCATTTCTGTGCAGACTTCGCAGATACTCGTTGATTTTAACTGTAATGTTGCGACAGCGACCTAAGATTAAAGAGGCAAACAAAATCGATAAGACATTTCGTGTAAGGAGCATGAAAATGAGTAGCCTGGTTGAGAGGCTTCGTGCAAGATCAGATCGCAAGCCAGTTTATAATCTAGATGAGTCAGATGACGATGCTGACTTTTTGCCTGGGAAACCTGGGAGAACTGAGGAAAACTTTGAGAGGATAGTTAGAAACCCATATACTCCTGATTGTGCTATTAATTCATGCCAAGCCTGTGGAGAAAGTGAAGATCTTCTAAGCTGTGAAACTTGTACTTATGCTTTCCATCCTAAGTGCTTACTTCGACCACTTAAAGCTCCAAATCCAGATAATTGGAGGTGCCCTGAATGTGTTAGCCCGTTAGGTGATATTGAAAAGATACTAGATTGTGAGATGCGCCCATCTGTAGCGGGTGATGGCGAGGCCTCAAAACCGGTCTCAAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTTTCATATCTGCACTGCACGTGGGTTTCAGAGAAAGAGTTTCTGAAAGCTTTCAAGTCACATCCTCGCCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCTACAAATACTTCTGATGAAGACTTCATTGCCATTCGACCTGAATGGACCATGGTTGATCGTATACTTGCTTGCAGGGGTCATGATGATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTTCATACGATGAATGCTATTGGGAGTCTGAGTCTGATATTTCTGCGTTTCATCCAGAGATAGAAAGATTTACAAAAATTCAGTCTAGGTCTAGGAAAAGTGCTTCTAGTAAGAAGAAAAGTGGCAGTAAGGATGGTGCTGAAGAAAAAAAGCAGCAGAAAGAATTTCAACACTATGAACAAAGCCCCAGCATTCTTTCAGGCGGCACTCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTGCGTTTCTCTTGGTCTAAGCAAACTCACGTTATACTTGCTGATGAAATGGGACTAGGCAAAACCATACAAAGTATTGCTTTTTTAGCATCTCTTTTTGAAGAGAGAGTGTTTCCCCATTTAGTGGTTGCTCCCCTGTCAACTCTTCGAAATTGGGAACGTGAATTTGCAACATGGGCGCCTCAAATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGAACTGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGCAAAATAGCCAGTGAGAGCAAGCAAGATAGGATCAAATTTGATGTCCTTTTGACATCGTATGAAATGATCAACTTTGACTCAGCATCGTTGAAACCTATAATGTGGGAGTGCATTATAGTTGATGAAGGTCACCGACTTAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTGTACTTTTGACTGGGACTCCTCTTCAGTTGAATCCTACTTATGGCAACTTGTCTGGTGCATTTCAGAACAATTTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAGGAGTTCCAGGAAGAGTTTAGAGATATTAATCAGGAGGAGCAAATATCAAGGCTTCACAAAATGTTGGCTCCGCACCTCCTTCGAAGAGTGAAGAAAGATGTGATGAAGGAGTTGCCTCCTAAAAAGGAACTTATTTTAAGAGTTGAGTTAAGCAGCAAACAGAAAGAGTATTATAAGGCAATTTTGACACGTAATTATCAAATATTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAATTGCGCAAACTATGTTGTCATGCTTATATGTTAGAAGGGGTTGAGCCAGATATTGAAGATCCAAAAGAATCATACAAATCTCAATCCCTAAGGCTGAAAGTTGCATTTTCCTTTCTCTATGGCAGACAGCTACTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACCTGTTAGAAGATTACTGTTCTTACAAGAATTGGCTGTATGAAAGGATAGACGGCAAGGTTGCTGGAGCTGAAAGACAAGTAAGGATAGATCGGTTTAATGCAAAAAATTCTTCGAGATTTTGCTTTCTTCTTTCCACCAGAGCTGGAGGATTGGGAATAAACCTTGCAACTGCTGACACGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAGAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTGGAAGAGTTGGATGATATCATAAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCTGGTAAATCCCGCCAAATTCATTATGACGATGCTTCAATAGATAGATTGTTGGATCGTGAGCAAGTTGGAGTTGAAGAAGCTATGGTGGATGATGAAGACGATGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCAGAGGAGGCAAGGAAAAAAGAAGTGGACAATAAAAATACTGTTAACAATTCAGATAGAGCAAATTACTGGGAGGATTTGTTGAGAGACAGATACGAAGAGCATAAAACTGAAGAGTTTAGTTCCTTGGGCAAGGGCAAGCGAAACCGCAAGCTGCTCTTTGGTATAGATTATGCTGATAATTGGCACTCCAACAAGGAGAGTTCCACATTTACTATTTGTACTTTGAAATTGCCATCATCATTATCATCATCATTAAAGGCAATTTCTGTATTTGCCAAGTATCAGATGGCTTCTGTTGAGGAGGATGATCTTGCTGGCCTAGAAGATGTAAGTTCTGATGAAGATGACAACTATGAAGCAGATCTTACTGATGGCGATTCAAATTCAACTGGAACTACTTCGGGTAGAAGGCCTTACAGAAAGAAAGCCCGTGCAGATAGTACAGAGCCACTTCCTCTGATGGAAGTGAAGAAAAGCTTCTGTCTGTCAATATCTGCAATTCATCTCACTTTAAGAATCTATTACAGGTTTGGAGTTGGTGATTATGATTGGAAGGAGTTTACTCCCCGCTTGAAACAGAAGACGTATGAAGAAATCAAAGATTATGGATTCCTTTTCTTGTCTCATATCGCTGAAGACATAACTGATTCTCCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTAAGAATACATGATGTACTAGTTAGGATTGCAGTTCTTCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAAGTATCCTGGAACTCTGCTTTACACAGATGACATCTTATTGCGGTATCCTGGTTTGAAGGGTGGAAAGATATGGAAGGAGGAACATGATATAGTGTTACTGCGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCAATTGTGGATGATAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCGTAATAAATTTACCAGTACCAGGACAAGTCGGTACTCCGGTGCAAAATGGTGCAAATTCAACAAATGTAGAAGCACAGGCCAACCACCAATCTGGGGAAAATGGTGGGAGTGATATGGTAGCTGATGGTGCGCTGGGTTCTGGTGATGCTAGGAACCAAGCACCGGTATATCAAGACTCTTCAATGTTATATCATTTTAGAGACATGCAGAGAAGACAGGTCGAGTTTGTAAAAAAGAGGGTTCTTCTGTTGGAAAAAGGGCTCTATGCTGAGTACCAGAAAGAATACTTTGGTGACCATAATACTAGTGAAGCCATGAATGTAGAATTTAAAAATGAACCAAAGGATTCAAATGTTCCAAGCTGTAAATCGGGGGAGATTGACAAGAAAATGATTGATCAACTGCCTCAATTAGAAGAAATAGCTTCAGAAGAATTTTCTGCTGCTGCTTGTGATAGTGACCCAAATCGATCAGAATTGGTTCGACTTTACAATGAGATGTGCAAGGTTGCGGAAGGAAACACCACTGAATTGGCTGGAGGACCAGCAGATGTCAGCTTGACAAAGAACTTACTTCCCCTTGAAACTGTTTGTGAAGACATCAATAAAATTCTAACACCCACTAATCAAGATGATGGCACTGCGGAAATGCCAATACTGAGTCCAGGCATCAAATCAGAGGCTGTATCGGAGAGTGAAGTTGCTGGCGCCAGATTGCCCTCAACTCCTCAAGATGACTGCAAACCTGACAATGCAGTGAACGATGAGGGAAAAGATGCGGTGATTGGGTCCGCCAACGGAAAAGAAAGTGGATCAGAGACAAGGGAAGGTGATGTTGAAATGGGCGAAGCCAGCAATAATGCTGAGATGGATGAAAATATGGATAAATCTGATCCAGGGAGCGTTGCCTTGGATAGGTAA 4629 0.4068 MPSGHPRLIIIQGSRDDCTGIVVSSSFHFVALTIKMQMIPFLCRLRRYSLILTVMLRQRPKIKEANKIDKTFRVRSMKMSSLVERLRARSDRKPVYNLDESDDDADFLPGKPGRTEENFERIVRNPYTPDCAINSCQACGESEDLLSCETCTYAFHPKCLLRPLKAPNPDNWRCPECVSPLGDIEKILDCEMRPSVAGDGEASKPVSKQIFVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSHPRLKTKVNNFHRQMASTNTSDEDFIAIRPEWTMVDRILACRGHDDEKEYLVKWKELSYDECYWESESDISAFHPEIERFTKIQSRSRKSASSKKKSGSKDGAEEKKQQKEFQHYEQSPSILSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARTVIREYEFYFPKKQKKIKKKKSGKIASESKQDRIKFDVLLTSYEMINFDSASLKPIMWECIIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQLNPTYGNLSGAFQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIEDPKESYKSQSLRLKVAFSFLYGRQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWLYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVLIYRLITRGTIEERMMQMTKKKMVLEHLEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGVEEAMVDDEDDDGFLKAFKVANFEYIDEVEAAAEEARKKEVDNKNTVNNSDRANYWEDLLRDRYEEHKTEEFSSLGKGKRNRKLLFGIDYADNWHSNKESSTFTICTLKLPSSLSSSLKAISVFAKYQMASVEEDDLAGLEDVSSDEDDNYEADLTDGDSNSTGTTSGRRPYRKKARADSTEPLPLMEVKKSFCLSISAIHLTLRIYYRFGVGDYDWKEFTPRLKQKTYEEIKDYGFLFLSHIAEDITDSPTFSDGVPKEGLRIHDVLVRIAVLLLIRDKVKFASEKYPGTLLYTDDILLRYPGLKGGKIWKEEHDIVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPVINLPVPGQVGTPVQNGANSTNVEAQANHQSGENGGSDMVADGALGSGDARNQAPVYQDSSMLYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFGDHNTSEAMNVEFKNEPKDSNVPSCKSGEIDKKMIDQLPQLEEIASEEFSAAACDSDPNRSELVRLYNEMCKVAEGNTTELAGGPADVSLTKNLLPLETVCEDINKILTPTNQDDGTAEMPILSPGIKSEAVSESEVAGARLPSTPQDDCKPDNAVNDEGKDAVIGSANGKESGSETREGDVEMGEASNNAEMDENMDKSDPGSVALDR 1542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0672 1542 Pfam Chromo (CHRromatin Organisation MOdifier) domain 184 238 IPR023780 -
Lele25g0672 1542 Pfam Chromo (CHRromatin Organisation MOdifier) domain 275 322 IPR023780 -
Lele25g0672 1542 SMART chromo_7 181 250 IPR000953 -
Lele25g0672 1542 SMART chromo_7 272 326 IPR000953 -
Lele25g0672 1542 MobiDBLite consensus disorder prediction 1525 1542 - -
Lele25g0672 1542 SMART ultradead3 364 590 IPR014001 -
Lele25g0672 1542 CDD SF2_C_SNF 718 815 - -
Lele25g0672 1542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 723 896 IPR001650 -
Lele25g0672 1542 SMART DUF1086_2 1024 1182 IPR009462 GO:0003677|GO:0006338
Lele25g0672 1542 MobiDBLite consensus disorder prediction 1025 1060 - -
Lele25g0672 1542 Gene3D - 262 323 - -
Lele25g0672 1542 Pfam Helicase conserved C-terminal domain 720 816 IPR001650 -
Lele25g0672 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 614 IPR027417 -
Lele25g0672 1542 SMART PHD_3 135 178 IPR001965 -
Lele25g0672 1542 Gene3D - 182 257 - -
Lele25g0672 1542 ProSiteProfiles Zinc finger PHD-type profile. 133 180 IPR019787 -
Lele25g0672 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 847 IPR027417 -
Lele25g0672 1542 Pfam SNF2-related domain 388 680 IPR000330 GO:0005524|GO:0140658
Lele25g0672 1542 MobiDBLite consensus disorder prediction 1264 1288 - -
Lele25g0672 1542 ProSiteProfiles Chromo and chromo shadow domain profile. 182 264 IPR000953 -
Lele25g0672 1542 MobiDBLite consensus disorder prediction 325 356 - -
Lele25g0672 1542 MobiDBLite consensus disorder prediction 1464 1542 - -
Lele25g0672 1542 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 76 813 - -
Lele25g0672 1542 Pfam CHD subfamily II, SANT-like domain 1049 1174 IPR009462 GO:0003677|GO:0006338
Lele25g0672 1542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 380 566 IPR014001 -
Lele25g0672 1542 MobiDBLite consensus disorder prediction 335 354 - -
Lele25g0672 1542 Gene3D - 812 893 IPR027417 -
Lele25g0672 1542 CDD CD1_tandem 184 254 - -
Lele25g0672 1542 Gene3D - 624 811 IPR027417 -
Lele25g0672 1542 Pfam CHD subfamily II, DUF1087 914 967 IPR009463 -
Lele25g0672 1542 Gene3D - 1148 1278 - -
Lele25g0672 1542 Gene3D - 360 623 IPR038718 -
Lele25g0672 1542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 180 IPR013083 -
Lele25g0672 1542 ProSitePatterns Zinc finger PHD-type signature. 136 177 IPR019786 -
Lele25g0672 1542 Pfam PHD-finger 136 178 IPR019787 -
Lele25g0672 1542 SUPERFAMILY Chromo domain-like 262 326 IPR016197 -
Lele25g0672 1542 ProSiteProfiles Chromo and chromo shadow domain profile. 274 333 IPR000953 -
Lele25g0672 1542 SMART DUF1087_2 913 980 IPR009463 -
Lele25g0672 1542 CDD CD2_tandem 272 321 - -
Lele25g0672 1542 SMART helicmild6 749 848 IPR001650 -
Lele25g0672 1542 SUPERFAMILY Chromo domain-like 148 260 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0672 Lele-ChrLele25 4224284 4247295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0672 718 834 RAD5 or RAD16-like Gene Family AT5G22750 28.571 7.36e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele25g0672 SNF2_N 7e-62 CL0023