Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0670 ATGACTGTGGAAACCAGAACTGATGAACCCAGAGGACAATTTCCTGTAGGAATGCGTGTTCTTGCTGTTGACGATGACCCAACTTGTCTCTTGGTGTTGGAAACTCTCCTTCGGAGATGCCAATATCACGTGACGACGACCAATCAGGCAATAACAGCTTTGAAGATGCTAAGAGAAAACAAAAACATGTTCGACCTGGTTATCAGTGATGTTCATATGCCTGACATGGACGGATTTAAGCTTCTTGAGCTTGTCGGTCTTGAGATGGACCTACCTGTCATAATGTTGTCTGCAAATGGCGACACAAAGCTGGTGATGAAGGGGATTACGCATGGGGCATGTGATTATCTTCTGAAACCTGTTCGAATTGAAGAGCTAAAGAACATTTGGCAGCATGTGATAAGGAGGAAGAGATTTGACTCAAAGGAGAAAAACAGTACTTGTAATCAAGACAAGCCTCATTCTGGTACTGCCAACAATGAATTAGGTTCAGCAGGATTTGGGAATACTGATCAAAATGGAAAACTTACCAAGAAAAGGAAGGATCAGGATGATGAAGATGATGATGAGCACGAGCATGGTCATGACAACGATGATCCTTCAACGCAGAAGAAGCCTCGTGTTGTTTGGTCTGTTGAGCTCCACAGAAAGTTTGTTGCTGCTGTTAATCAACTAGGCATTGACAAAATATAG 693 0.4286 MTVETRTDEPRGQFPVGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTNQAITALKMLRENKNMFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKRFDSKEKNSTCNQDKPHSGTANNELGSAGFGNTDQNGKLTKKRKDQDDEDDDEHEHGHDNDDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0670 230 Gene3D - 18 187 - -
Lele25g0670 230 SMART REC_2 18 130 IPR001789 GO:0000160
Lele25g0670 230 MobiDBLite consensus disorder prediction 174 203 - -
Lele25g0670 230 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 225 IPR045279 GO:0009736
Lele25g0670 230 FunFam Two-component response regulator 18 173 - -
Lele25g0670 230 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lele25g0670 230 SUPERFAMILY CheY-like 17 141 IPR011006 -
Lele25g0670 230 PIRSF RR_ARR_type-B 1 230 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele25g0670 230 MobiDBLite consensus disorder prediction 141 208 - -
Lele25g0670 230 MobiDBLite consensus disorder prediction 150 173 - -
Lele25g0670 230 CDD REC_typeB_ARR-like 20 134 - -
Lele25g0670 230 Gene3D - 201 230 - -
Lele25g0670 230 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0670 Lele-ChrLele25 4217631 4219347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0670 1 229 Response Regulator Gene Family AT2G25180 69.565 5.20e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele25g0670 Response_reg 1e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0670 25 4217631 4219347 Lele02g0657 02 3932593 3936180 CCT
Lele25g0670 25 4217631 4219347 Lele27g1419 27 20457429 20460449 hybridization
Lele25g0670 25 4217631 4219347 Lele28g0663 28 4228623 4231628 hybridization