Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0663 ATGGGCAGGCCACAACAGAGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTGTCTGAAATTCGCCACCCTCTATTAAAGACAAGGATCTGGCTTGGTACGTTCGAAACCGCAGAAGATGCAGCAAGAGCCTACGATGAAGCAGCGAGGCTAATGTGTGGGCCCAGAGCAAGAACCAACTTCCCTTATAACCCCAATGCGTCTCAGTCATCTTCCAAGCTTCTCTCTGCCACTTTGACTGCGAAACTCCATAGATGCTATGTGGCTTCACTGCAGATGATCAGACCATCATTACCAGAGCCTCAGAGAGTGATGCCTTCTTCGCCACATACTGAAGTTTCCACGAGCAATTCTGCTGATACAGTGTTGCCGCACAAGAGAGCCCAAGAAGAGCAAGAATCAGAGGCCAACTGGGTGATGAAGAAGGTGAAGGTGGAAACTAGTCAGCAATTCAAACCTCTTGAAGAAGATCACATTGAGCAGATGATAGAGGAGTTGATTTATTACGGTTCTATTGAACTCTGCTCTTAA 537 0.4823 MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSSKLLSATLTAKLHRCYVASLQMIRPSLPEPQRVMPSSPHTEVSTSNSADTVLPHKRAQEEQESEANWVMKKVKVETSQQFKPLEEDHIEQMIEELIYYGSIELCS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0663 178 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lele25g0663 178 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lele25g0663 178 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Lele25g0663 178 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lele25g0663 178 MobiDBLite consensus disorder prediction 101 137 - -
Lele25g0663 178 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Lele25g0663 178 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 132 - -
Lele25g0663 178 MobiDBLite consensus disorder prediction 109 125 - -
Lele25g0663 178 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Lele25g0663 178 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lele25g0663 178 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Lele25g0663 178 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0663 Lele-ChrLele25 4168417 4169067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0663 1 178 AP2-EREBP Transcription Factor Family AT5G25190 66.480 5.67e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele25g0663 AP2 7.1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0663 25 4168417 4169067 Lele01g0671 01 3900297 3902967 CCT
Lele25g0663 25 4168417 4169067 Lele03g0667 03 3909898 3912621 CCT
Lele02g0663 02 3981105 3983011 Lele25g0663 25 4168417 4169067 CCT
Lele03g0673 03 3968328 3970189 Lele25g0663 25 4168417 4169067 CCT
Lele25g0663 25 4168417 4169067 Lele27g1424 27 20507647 20508298 hybridization
Lele25g0663 25 4168417 4169067 Lele28g0656 28 4187695 4188339 hybridization