Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0661 ATGCTTCCTGCTTTATACGTACCATATCATCCAGTTATTCAGGTGGAGAACAAAGAACACCAAATGGATTTACACAAGAAGATGGTTATAGCTCTCGCCGTTGTTTGTACAGCACTTGTAGTCATGTTTTGCTTCTTATGCTTCTGGATTTATAGTAGGAAGCATCTATCCAAATCCAACAGGAAAAGCGTTCCCAACTCAGATGCCGAGAAAGGGGTGGTTGCGCTTGCTCCATTTTTAAGTAAATTCGGTTCAGTAAAAATGGTTGGGAAAAAAGGGTCTCTTGCAATCATTGATTATAAGCAAATAGAAAAAGCGACCAGCAATTTCCAGGAAAGTAACATCCTGGGCCAGGGTGGATTTGGATGTGTTTACCGGGCTCGGTTGGACGATAATCTGGATGTTGCCGTCAAGAGACTACACTGTGAAACTCAAAGTGCCGAGAGAGAATTCGAGAACGAGGTGAATTTGTTAAGTGAAATTCGGCATCCAAATATAATTTCTATACTCGGTTGCAGCGAAAATGATGACAAGAGGTTCATTGTCTATGAATTGATGCAAAACGGATCCCTGGAAGCTCAATTACACGGACGCTCTCATGGTGCTTCATTGACCTGGCATATGAGAATGAAAATTGCTCTTGATACAGCAAGGGGATTAGAATATCTCCATGAGCACCGTAAACCTGCAGTGATCCATAGAGATCTGAAATCATCTAATATTCTTTTAGATGCGAACTTCAATGCTAAGCTGTCTGATTTTGGTTTGGCCATAATGGATGGGGCCCAAAGCAAGAGTAACATAAAGCTGTCAGGCACATTGGGGTACGTTGCCCCTGAGTATCTCCTAGATGGAAAATTGACTGATAAAAGTGATGTGTACGCATTTGGAGTTGTGCTTCTGGAGCTTCTGCTGGGAAGGAAGCCTGTAGAAAAACTGTCACCATCTCATTGCCAATCGCTTGTAACATGGGCGATGCCACAGCTCACGGACAGATCAAAGCTTCGAAGCATAGTAGATCCAGTAATCAAGGACGCCATGGACACCAAGCATTTATACCAGGTTGCAGCAGTGGCGGTGCTGTGCGTGCAAGCAGAACCGAGTTATAGACCGTTGATCACGGATGTGCTGCACTCGCTGGTGCCTCTGGTTCCGGTGGAGCTGGGAGGAACACTCGGAGTCTCACATGTGCCCCACTCTGTTATGCCGTGA 1212 0.4488 MLPALYVPYHPVIQVENKEHQMDLHKKMVIALAVVCTALVVMFCFLCFWIYSRKHLSKSNRKSVPNSDAEKGVVALAPFLSKFGSVKMVGKKGSLAIIDYKQIEKATSNFQESNILGQGGFGCVYRARLDDNLDVAVKRLHCETQSAEREFENEVNLLSEIRHPNIISILGCSENDDKRFIVYELMQNGSLEAQLHGRSHGASLTWHMRMKIALDTARGLEYLHEHRKPAVIHRDLKSSNILLDANFNAKLSDFGLAIMDGAQSKSNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLSPSHCQSLVTWAMPQLTDRSKLRSIVDPVIKDAMDTKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLVPLVPVELGGTLGVSHVPHSVMP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0661 403 SMART serkin_6 110 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0661 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Lele25g0661 403 Gene3D Transferase(Phosphotransferase) domain 1 186 385 - -
Lele25g0661 403 Gene3D Phosphorylase Kinase; domain 1 80 185 - -
Lele25g0661 403 ProSitePatterns Protein kinases ATP-binding region signature. 116 138 IPR017441 GO:0005524
Lele25g0661 403 FunFam Protein kinase superfamily protein 77 185 - -
Lele25g0661 403 FunFam probable receptor-like protein kinase At1g80640 186 385 - -
Lele25g0661 403 SUPERFAMILY Protein kinase-like (PK-like) 92 380 IPR011009 -
Lele25g0661 403 PANTHER OS01G0750732 PROTEIN 14 382 - -
Lele25g0661 403 Pfam Protein tyrosine and serine/threonine kinase 113 376 IPR001245 GO:0004672|GO:0006468
Lele25g0661 403 CDD STKc_IRAK 116 383 - -
Lele25g0661 403 ProSiteProfiles Protein kinase domain profile. 110 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0661 Lele-ChrLele25 4159275 4161725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0661 17 384 Receptor kinase-like Gene Family AT3G58690 46.133 1.05e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lele25g0661 PK_Tyr_Ser-Thr 4.9e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0661 25 4159275 4161725 Lele02g0652 02 3890440 3894033 CCT
Lele25g0661 25 4159275 4161725 Lele04g0670 04 4041032 4044615 CCT
Lele25g0661 25 4159275 4161725 Lele27g1426 27 20514280 20517132 hybridization
Lele25g0661 25 4159275 4161725 Lele28g0655 28 4177400 4181406 hybridization