Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0656 ATGGCGTACCACAACCATCATCTCTCTCAAGACCTACCGCTCCACCATTTCACAGAGCAATCTCATCATCATCAGCAGCAGAACCAGGTGCTAACTGATAATTCCTTGCGAACGATATTGCAGGACCCGACCAGTAAGGCCGGCTCCGATCCCAACCAACATCACCACCCGCTTCAAACCGCTCCCAATTGGCTCAACAACGCTCTCCTCCGAACTCACTACACCGACAACAATAACGGCAACAACAGTAACACCGCTGCTCCGAACAATACCAACGCCACCAATTTCCTCAACCTCCACACCGCCGCCTCCGACTCCACCGGAGCTGCTCCCCAATCCTCCAGCCAGTGGCTGGCACGCCCGATCCTCAACCGGAATCATAGTGACGTCATTGACGACGTTACGGCCGGGGACTCTATCATCGCCGGTGCGGCTTTGTCCCATGAGTCCGCGGATTTAAAGGCGACCGGCGACAACCTTAATAGCAAGGGCGAGGCGTTGGTGGTGGACAGCGCCGGCGCCGCCGGGGACGGTTTGATGAACTGGCAGAATGCTAGGTTCAGGGCGGAGATTCTTGCCCACCCGCTGTACGAACAGCTGCTATCGGCACACGTGGCTTGCCTGCGGATCGCCACGCCGGTTGACCAGCTGCCGAGGATCGATGCTCAGCTGGCTCAGTCGCAGAATGTGGTTGCCAAGTACTCGGCGTTGGGGCCCGGGAGCCAGAGCATGGTTGGGGACGATAAGGAACTCGATCAGTTCATGTCACACTATGTCTTGTTGCTTTGCTCATTCAAAGAACAACTTCAACAACATGTCAGAGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTGACAGGAGTTTCACCTGGAGAAGGAACAGGGGCAACAATGTCAGATGATGAAGACGACCAGGTGGACAGTGATGCCAACCTGTTTGATGGTAGTTTGGATGGTTCCGACATGGGATTTGGTCTTCCAACGGAGAATGAGAGGTCCCTTATGGAGCGTGTTAGGCATGAATTAAAGCACGAACTCAAACAGGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAGATTTTGCGCAAGAGACGAGCAGGGAAACTTCCTGGTGACACAACCTCTGTTCTTAAAGCTTGGTGGCAGTCACATTCCAAGTGGCCTTACCCTACTGAGGAAGACAAGGCAAGGTTGGTCCAGGAAACTGGTTTGCAATTGAAGCAGATTAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCCACCTCAACGGTTTTGAAGAGCAAGCGCAAAAGGTGA 1344 0.5268 MAYHNHHLSQDLPLHHFTEQSHHHQQQNQVLTDNSLRTILQDPTSKAGSDPNQHHHPLQTAPNWLNNALLRTHYTDNNNGNNSNTAAPNNTNATNFLNLHTAASDSTGAAPQSSSQWLARPILNRNHSDVIDDVTAGDSIIAGAALSHESADLKATGDNLNSKGEALVVDSAGAAGDGLMNWQNARFRAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGPGSQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDMGFGLPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0656 447 CDD homeodomain 373 434 IPR001356 GO:0003677
Lele25g0656 447 ProSiteProfiles ELK domain profile. 350 370 IPR005539 GO:0003677
Lele25g0656 447 SMART ELK_2 350 371 IPR005539 GO:0003677
Lele25g0656 447 SUPERFAMILY Homeodomain-like 372 435 IPR009057 -
Lele25g0656 447 MobiDBLite consensus disorder prediction 295 314 - -
Lele25g0656 447 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Lele25g0656 447 MobiDBLite consensus disorder prediction 41 60 - -
Lele25g0656 447 Pfam KNOX1 domain 188 228 IPR005540 GO:0003677|GO:0005634
Lele25g0656 447 Gene3D - 369 441 - -
Lele25g0656 447 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
Lele25g0656 447 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 432 - -
Lele25g0656 447 SMART HOX_1 372 437 IPR001356 GO:0003677
Lele25g0656 447 SMART KNOX1_2 185 229 IPR005540 GO:0003677|GO:0005634
Lele25g0656 447 Pfam ELK domain 350 371 IPR005539 GO:0003677
Lele25g0656 447 SMART KNOX2_2 241 296 IPR005541 GO:0003677|GO:0005634
Lele25g0656 447 Pfam KNOX2 domain 245 295 IPR005541 GO:0003677|GO:0005634
Lele25g0656 447 MobiDBLite consensus disorder prediction 73 93 - -
Lele25g0656 447 FunFam homeobox protein knotted-1-like 3 isoform X1 371 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0656 Lele-ChrLele25 4128680 4131434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0656 1 447 Homeobox Transcription Factor Family AT5G25220 65.032 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele25g0656 KNOX2 1.3e-21 No_clan