Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0649 ATGGGGAAGCCCACCGGTAAGAAGAAGGATCCTGTAACACAGAAGGCTGCGAATGCAAGCGGCAAGCCGAGCAAGCCCTCTGAGAGGACTTCCAAAGCTTTTGACGAAGACACAGCAATCTTCATCAACATGTCGCAGGATCTCAAGGAAGAAGGTAATAGACTCTTTCAGAAAAGGGACCATGAAGGGGCTATGTTGAAGTTTGAAAAGGCCCTCAAGCTCCTTCCCGGAAACCACATAGATGTGGCACACTTGCGTACCAATATGGCTGCGTGTTATATGCAACTCGGTCTTGGAGAGTACCCTCGAGCAATTAATGAATGTAATTTAGCTCTCGAAGTATCACCCAGATATAGCAAGGCTCTATTGAGAAGAGCAAAGTGCTATGAAGCATTGAATCGATTCGATTATGCACTCAGAGATGTTAATTTTGTTTTGAGCATGGAGCCTAATAATCTTAATGCATTGGAGGTTCTCGGGAGTTTGAAGAAGACCATGGAAGAAAAAGGCATCACTATTGATGAGAAAGATTTGGCAAGTTTAGAGCAACCTACCACTGCCCCTATGCGTAAAGTGATCAGAGAAAAACTAAAGAAAAAGAAAAGTAAAAAGAGTGAGAGCAAGGCAAAGGATAAGGCGATTCTTGAGGATACTACGAATGCTGTTAAAGATAAAGAAATGGTGACAAAAACAATTGCAAAAAAGGAAGTGGTTCTGGAGCCTGTTAAAGAAGAAAAAGTAGTCACAAGGACCGTGAAGCTGGTATTTGGAGAGGATATAAGGTCGACCCAGTTGCCATTGAATTGTAGCATGAGGTTGGTGAGAGACATAATTAAGGATCGATTTCCCGGATTGAAGGGGGTTCTTGTTAAATATAGGGATCAAGAAGGTGATTTGGTTACTATCACTACTACTGATGAATTAAAATTAGCTGAATCTTCAGGTAAAGCCTTGAGTTCTCTTCGACTCTATATTACGGAAGTCAATCCAGAGGAGGAACCAACTTATGATGGAATAACCAATGAGGATGAGATGCAAGGTGATGGTATTGAGCATGTGCCAACGGAAGCAGGCAAGGATTTAGCAAGTAAGCTGACTAATGTGGAGGATTGGATAATCCAATTTGCTAGGATGTTCAAGAACCATGTTGGGTTTGATTCTGATTCATATTTGGATATGCACGAGGAGGGAATGAAGCTGTATTCAGAAGCCTTGGAGAATGTGGTAACAAGTGACGATGCTCAAGAGCTTTTTGAAATCGCTGCAGATAAATTTCAAGAGATGGCAGCTTTGGCATTATTCAACTGGGGGAATGTTCACATGTCCAGGGCAAGGAGGCGTGCTTCCATTACAGAGGACGGGTCAAAGGAATCTGCTCTTGAGCGAATTAAAGCTGCATATGAGTGGGCAAGAAAGGAGTACAAGAAAGCAGAGATGAGATATGAAGAAACCTTGAAAGTCAAACCAGACTTCTATGAGGGATTTCTGGCACTTGGCCATGAGCAGTTCGAGCAAGCAAAGCTCTGCTGGTATTATGCAATGGCATGCCAAATGAATTTAGAGGATGGCCCTTCCAGTGAGGTTTTACAACTATATAACAAGGCAGAGGACAGCATGGATAGAGGCATGTTGATGTGGGAGGAGATTGAGGAGCGGCGTTTAAATGGACTATCCAAATTGGATAAATATAGAGCTCACTTGGAAAAAATGGGCTTAGATGGTTTTCTCAAGGATATTTCTTCTGATGAAGCTGCAGAGCAGGCTGCAAATGCGAGGTCACAAATATATATTTTATGGGGCACCATATTGTATGAGCGTTCTGTTGTGGAATATAAGATAGGCTTACCTTCATGGGAGGAATGTTTGGAGGTTGCAGTCGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGGGGTCATGATAAAGAATCATTGTTCCAATCAAACAGCACTAGAAGGTTTGGGGTTCAAAATTGACGAGATAGTGCAGGCATGGAATGAAATGTATGATGCCCAGAGGTGGCAGTTTGGTGTAGCATCATTTCGTCTTGAACCATTGTTCCGGCGACGTGTTCCGAGACTTCATCACATCTTAGAGCATTTTTGA 2112 0.4266 MGKPTGKKKDPVTQKAANASGKPSKPSERTSKAFDEDTAIFINMSQDLKEEGNRLFQKRDHEGAMLKFEKALKLLPGNHIDVAHLRTNMAACYMQLGLGEYPRAINECNLALEVSPRYSKALLRRAKCYEALNRFDYALRDVNFVLSMEPNNLNALEVLGSLKKTMEEKGITIDEKDLASLEQPTTAPMRKVIREKLKKKKSKKSESKAKDKAILEDTTNAVKDKEMVTKTIAKKEVVLEPVKEEKVVTRTVKLVFGEDIRSTQLPLNCSMRLVRDIIKDRFPGLKGVLVKYRDQEGDLVTITTTDELKLAESSGKALSSLRLYITEVNPEEEPTYDGITNEDEMQGDGIEHVPTEAGKDLASKLTNVEDWIIQFARMFKNHVGFDSDSYLDMHEEGMKLYSEALENVVTSDDAQELFEIAADKFQEMAALALFNWGNVHMSRARRRASITEDGSKESALERIKAAYEWARKEYKKAEMRYEETLKVKPDFYEGFLALGHEQFEQAKLCWYYAMACQMNLEDGPSSEVLQLYNKAEDSMDRGMLMWEEIEERRLNGLSKLDKYRAHLEKMGLDGFLKDISSDEAAEQAANARSQIYILWGTILYERSVVEYKIGLPSWEECLEVAVEKFELAGASPTDIGVMIKNHCSNQTALEGLGFKIDEIVQAWNEMYDAQRWQFGVASFRLEPLFRRRVPRLHHILEHF 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0649 703 Gene3D - 237 328 - -
Lele25g0649 703 Coils Coil 460 480 - -
Lele25g0649 703 SUPERFAMILY CAD & PB1 domains 248 337 - -
Lele25g0649 703 CDD PB1 251 326 - -
Lele25g0649 703 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Lele25g0649 703 PANTHER PROTEIN CLMP1 1 702 IPR044517 -
Lele25g0649 703 SMART PB1_new 249 328 IPR000270 GO:0005515
Lele25g0649 703 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Lele25g0649 703 Gene3D Tetratricopeptide repeat domain 43 174 IPR011990 GO:0005515
Lele25g0649 703 SUPERFAMILY TPR-like 34 167 IPR011990 GO:0005515
Lele25g0649 703 Pfam PB1 domain 249 326 IPR000270 GO:0005515
Lele25g0649 703 SMART tpr_5 458 491 IPR019734 GO:0005515
Lele25g0649 703 SMART tpr_5 83 118 IPR019734 GO:0005515
Lele25g0649 703 SMART tpr_5 119 152 IPR019734 GO:0005515
Lele25g0649 703 SMART tpr_5 45 78 IPR019734 GO:0005515
Lele25g0649 703 MobiDBLite consensus disorder prediction 1 34 - -
Lele25g0649 703 SUPERFAMILY TPR-like 410 505 IPR011990 GO:0005515
Lele25g0649 703 ProSiteProfiles PB1 domain profile. 249 328 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0649 Lele-ChrLele25 4098684 4100881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0649 28 152 Calmodulin-binding Proteins AT3G25230 31.387 1.60e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0649 25 4098684 4100881 Lele01g0657 01 3840760 3847299 CCT
Lele25g0649 25 4098684 4100881 Lele03g0657 03 3848887 3851103 CCT
Lele25g0649 25 4098684 4100881 Lele27g1435 27 20584382 20586579 hybridization
Lele25g0649 25 4098684 4100881 Lele28g0646 28 4114512 4116709 hybridization