Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0648 ATGGCTACCATCGGGGAGGTTCATGACAATGTCATCCTCGTCGTTGTACTGAGACATTTGACGGAACCCAACTTCAATTTACTGAGACAGCTCATTGCCTGGAGGGTGAAAGTGGCTTTTACTTCCACATTGAGTACTTCGAGGAGCTATTATGACTATGGAGAAAGACACTATGCTATAGACATTGTGAACCACGAGTTCCCTCAGTTCACACCATACAACAACAGAATATATGATCAAACAATGGAGCTGGTTTGCATGGAGAATTACAGGAATCATCAAGGGATGAGAAGGCTCGAGCGTGAAAGTGGTTGCTACTTTGACAAGAAACATTTTGAGGACATGGTGCTTGATGGGAAATTTGAGGACGCCGAGACCTATCTATCTTGTTTCACAAATGTTGATGACAATAGGTTCTCCACCAAAATGTTCTTTGAATTGAGGAAACAGAAATTCCTTGAGGCATTGGACAGAAATGATCGTTCCAAGGCTCTAGATATCCTGATAAAGGATCTCAAAGGTTTTTCCCCGGGACGCGAAGAGCTTCTCAAAGAAATGACTCAGCTGTTGACAATTAATAATATAAGGGAACATGAATCTCTTTCAAACTACCAAGACACAGATTCTGTGAGGAAGATTATCGTAGAGGATCTTAAAACAATGATTGAAGAAAATCCACTGCTTCATGGAAAGCTCGAATTTCCTACTATAAAATCCCAGAGGTTAAGTAGTCTTCTAAGCCAAAGCTTAAATGGGCAGCATCTGCCTTGCAATCATCCTATTCCTGATCCTGGTATACAAACCTTCTTCGTGGACCATGTTTGTAAGCTGTGCTCAAATTCCTCAAATCCTGTAAACAGTGATGACTGTGGCCCATCTACTGTAACAGATTCCTTACTCTTCCCTACTGCTGATGAAAGTTCAGAAGCACCTGTGAAGAATGAAACACATGGGGTTCCTCGTTTGCAGGTAACATCATCGGCTGTAGAAAGTTACCTGCCCCAGAAAGTTGTTATGACACTGAATGATGATTCGCCTGCTACTAGCATGGATTTTCATCCTAATTGGCAAACTATTCTTCTAGTTGGAACCGAAATTGGCAATTTAGGAATTTGGGATGCTACCTCTGGTAAGAGGTTGTTCGTTGTAAATTTTGAGGTTTGGGACATTGGAGCATGTTCAACCAATTTCAAGGCAGCCACAGAAAAAGATTTGTGGATCTCTGTTAACAAAGTCATTTGGAGCTTTGATGGTAAAATGTTAGGGGTTGCATTTTCGAAACATCTTGTTCAGTTATATTCCTATATTGATGGGGAAATTGGCCAGCATTTGGAAATTGAAGCTCATGATGGCAGTGCCAATGATATAGCGTTTTCTCTTGTTCGTGGGCAACTATTAGTCATAACATGTGGTGACGACAAAACAGTAAAGGTGTGGGATTCAGATACCGGTGAGCTGTATTATAAATTTGGTGCTCACAATGCTCCAGTCTGTTCCATCTGTCCTCATGAGAAGGAAAATTTTCATTTTGTATTTTCAATTTCAATTGATGGAAAGATTAAGGCATGGTTATATGATAGTATGGGCCCCAGAGTTGATTATGACGCCCCTGTTCGAGGATACACAACATTGGCTTACAGTACTAATGATGAAAGGCTTTTTTCTTGTGGTGTTGGCAATGTTGGAGAGCCATTTCTTGTGGAATGGGATGACACTGAAGGGTACATAAAAAGAGTCTACGAGGGACTTACAGCTCCATGCTCTTCTAAAATCCACTTTGATACGACGAGGAACCGATATTTGGTTGCTGGTGATGATAATATGGTTAAATATTGGGATATGGACAATGTGCAGCTATTGTCAAGCAACAATTGCGATGGGAGCTTGCTGGCATATCCTTGCATCCGCTTCAACAGAGAGGGGAGATTGCTGGCTGTTGCTGCAAGAGAAAATAAAATCAAAATCTTAGCACCTGATTATGATGTTCTACAGATTCAAAGTGAAGCTCGTTCTATTCATGCCCCTGCTGTGCTCTCTGAAACCTCAGCAGTGAATGAGAACAAAGAAGTCTTGGAAGGCACGATGAACACTAATTTAACCGAAGAAGATGATAACTCAAAATTTTGGAGTATCTTCAAAATTTCTGAACCATCTCAGTGCCAGTTCTTGCAGCTCCCTGTTCATCCAAAAGTCAATAAGATTGTGAGACTGATTTACACCAACGCGGGAAAGGCCATCTTGGCATTGGCATCAGATGGTATAAATGTACTTTGGAAATGGCCAGCGAATGAGCAAGCAACCTCCCAAGTTTCCGCTCGCTTATGGCAACCGAGGAATGGCCCGCAGTTTATGAGCAATGACCTTGTGAACGTCAAGCCTGAAGAATCAATAGGCTGTTTTGCACTATCAAAAAACGATTCATATCTCATTTCAACATCAGGTGGTTCAATCTCCTTGTTCAACATGTTGTCATTCCGGACTATGATAACTTTCATGTCTCCACCACCTAAGGCAACATCTATTTCCTTCTACCCTCGAGATAATAATGTAATTGCTGTAGGCTTTGATGATGCTAGCATCTTTATTTATAACGTCCGTGTGAACCAGGTTATGAGAAAATTCAAGGGTCACTCAACAAGAATTACGTCACTTGCCTTCTCAGACAAATTACATGTTCTTGTTTCTGCTGAGGTTAATAATCAGATTATCTTATGGGATGTTGAAGGGTGGAGAAAATTGAAAGGAAGGCACTTGCAGATACCTGCTCAGAGGAAGCCAGAAGTGCCATCTGATACTCACATTCAATTTCACCCAGAACAGATAAACTTCCTTGCCGTACAAGATAGTCAGCTCGCAATTTATGAAGCCCGGGAATTAAATCTTGTCAAACAGTGGGTTCCAGTACTTCCTTTGGTTATCTCCCATGCAGTTTTCTCATGTGATGGAATGGAAATATATGCCGGTTTTGTGGATGGGACTGTCACAATATTAGACGCTTCAAATCTTGAACCTCTTTGCAGGATAGAGCCCACTGCTTTCCTTCCCCCAACTTCGAGTGAGAGCATAAACCTAGTTGCTATGGCTGCAAATCCGGTGAAGGCAGGTCAGTTTGCTGTGGGGCTTTCAGATGGTAATGTGTATGTGATGGAGCCTCCTGAGCCGCAACTTAATTGGTCCACACTTTCAAGTGCTGACAAGGATTGA 3204 0.4176 MATIGEVHDNVILVVVLRHLTEPNFNLLRQLIAWRVKVAFTSTLSTSRSYYDYGERHYAIDIVNHEFPQFTPYNNRIYDQTMELVCMENYRNHQGMRRLERESGCYFDKKHFEDMVLDGKFEDAETYLSCFTNVDDNRFSTKMFFELRKQKFLEALDRNDRSKALDILIKDLKGFSPGREELLKEMTQLLTINNIREHESLSNYQDTDSVRKIIVEDLKTMIEENPLLHGKLEFPTIKSQRLSSLLSQSLNGQHLPCNHPIPDPGIQTFFVDHVCKLCSNSSNPVNSDDCGPSTVTDSLLFPTADESSEAPVKNETHGVPRLQVTSSAVESYLPQKVVMTLNDDSPATSMDFHPNWQTILLVGTEIGNLGIWDATSGKRLFVVNFEVWDIGACSTNFKAATEKDLWISVNKVIWSFDGKMLGVAFSKHLVQLYSYIDGEIGQHLEIEAHDGSANDIAFSLVRGQLLVITCGDDKTVKVWDSDTGELYYKFGAHNAPVCSICPHEKENFHFVFSISIDGKIKAWLYDSMGPRVDYDAPVRGYTTLAYSTNDERLFSCGVGNVGEPFLVEWDDTEGYIKRVYEGLTAPCSSKIHFDTTRNRYLVAGDDNMVKYWDMDNVQLLSSNNCDGSLLAYPCIRFNREGRLLAVAARENKIKILAPDYDVLQIQSEARSIHAPAVLSETSAVNENKEVLEGTMNTNLTEEDDNSKFWSIFKISEPSQCQFLQLPVHPKVNKIVRLIYTNAGKAILALASDGINVLWKWPANEQATSQVSARLWQPRNGPQFMSNDLVNVKPEESIGCFALSKNDSYLISTSGGSISLFNMLSFRTMITFMSPPPKATSISFYPRDNNVIAVGFDDASIFIYNVRVNQVMRKFKGHSTRITSLAFSDKLHVLVSAEVNNQIILWDVEGWRKLKGRHLQIPAQRKPEVPSDTHIQFHPEQINFLAVQDSQLAIYEARELNLVKQWVPVLPLVISHAVFSCDGMEIYAGFVDGTVTILDASNLEPLCRIEPTAFLPPTSSESINLVAMAANPVKAGQFAVGLSDGNVYVMEPPEPQLNWSTLSSADKD 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0648 1067 Gene3D - 927 1064 IPR015943 GO:0005515
Lele25g0648 1067 Gene3D - 318 561 IPR015943 GO:0005515
Lele25g0648 1067 Gene3D - 699 923 IPR015943 GO:0005515
Lele25g0648 1067 SMART ctlh 105 163 IPR006595 -
Lele25g0648 1067 SUPERFAMILY WD40 repeat-like 751 1057 IPR036322 GO:0005515
Lele25g0648 1067 SMART WD40_4 390 434 IPR001680 GO:0005515
Lele25g0648 1067 SMART WD40_4 964 998 IPR001680 GO:0005515
Lele25g0648 1067 SMART WD40_4 824 864 IPR001680 GO:0005515
Lele25g0648 1067 SMART WD40_4 334 373 IPR001680 GO:0005515
Lele25g0648 1067 SMART WD40_4 573 613 IPR001680 GO:0005515
Lele25g0648 1067 SMART WD40_4 439 480 IPR001680 GO:0005515
Lele25g0648 1067 SMART WD40_4 622 657 IPR001680 GO:0005515
Lele25g0648 1067 SMART WD40_4 483 524 IPR001680 GO:0005515
Lele25g0648 1067 SMART WD40_4 784 821 IPR001680 GO:0005515
Lele25g0648 1067 SMART WD40_4 867 906 IPR001680 GO:0005515
Lele25g0648 1067 Pfam WD domain, G-beta repeat 869 906 IPR001680 GO:0005515
Lele25g0648 1067 Pfam WD domain, G-beta repeat 447 480 IPR001680 GO:0005515
Lele25g0648 1067 SUPERFAMILY WD40 repeat-like 332 657 IPR036322 GO:0005515
Lele25g0648 1067 ProSitePatterns Trp-Asp (WD) repeats signature. 893 907 IPR019775 -
Lele25g0648 1067 ProSiteProfiles Trp-Asp (WD) repeats profile. 874 908 IPR001680 GO:0005515
Lele25g0648 1067 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 874 908 - -
Lele25g0648 1067 ProSitePatterns Trp-Asp (WD) repeats signature. 467 481 IPR019775 -
Lele25g0648 1067 Gene3D - 566 685 IPR015943 GO:0005515
Lele25g0648 1067 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 110 163 IPR006595 -
Lele25g0648 1067 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 489 IPR001680 GO:0005515
Lele25g0648 1067 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 325 1065 IPR027728 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0648 Lele-ChrLele25 4087893 4096055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0648 419 657 Miscellaneous Gene Families AT5G08390 23.265 3.01e-09 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0648 25 4087893 4096055 Lele27g1437 27 20590004 20598257 hybridization
Lele25g0648 25 4087893 4096055 Lele28g0644 28 4102424 4109737 hybridization