Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0623 ATGGCAAAAGCAAACAAGTTCAGGGGTGTGAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAAATTCACCATCCATTACTGAAGAGACGTGTGTGGCTGGGGATTTTTGAGACGGCGGAGGCGGCTGCCAGGGCATACGACCAAGCTGCCATATTGATGAATGGTCAAAATGCGAAGACGAACTTCCCGACTTCAATGTATCAGCCCCAAGACAACGCTGCTTCTTTATCTCCCAAGGCTCTTTCAGGCCTTCTCAGCACGAAGCTCAGAAATTGTTGCAAAGCTCCGTCTCCTTCGCTCACTTGTCTCAGGCTTGACGCTGACAATTCTCACATTGGTGTGTGGCAGAAAGGAGCAGGACCACATTCTGAATCTAACTGGGTCGTCAGGGTGGAGCTCGGCAACAAGGATCAACCCAACAAGGACGAGCCCTATTCTTCGTCGTCGGTGAGGTCATCGGTGCCGGAGACGGGTGCACAAGATGATAACCTGTTGGTGGATGAAGAAGACATGGTCGCAATGGAGATGGTGGAAGATCTTCTTAACTGGAACTATCCTTGCTCTTCGAGTGCTTCTCAGGAATAG 585 0.5162 MAKANKFRGVRQRQWGSWVSEIHHPLLKRRVWLGIFETAEAAARAYDQAAILMNGQNAKTNFPTSMYQPQDNAASLSPKALSGLLSTKLRNCCKAPSPSLTCLRLDADNSHIGVWQKGAGPHSESNWVVRVELGNKDQPNKDEPYSSSSVRSSVPETGAQDDNLLVDEEDMVAMEMVEDLLNWNYPCSSSASQE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0623 194 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Lele25g0623 194 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Lele25g0623 194 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lele25g0623 194 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lele25g0623 194 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Lele25g0623 194 PIRSF PTI6 2 95 IPR017392 GO:0003700
Lele25g0623 194 PIRSF PTI6 121 180 IPR017392 GO:0003700
Lele25g0623 194 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lele25g0623 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lele25g0623 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 142 - -
Lele25g0623 194 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lele25g0623 194 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lele25g0623 194 MobiDBLite consensus disorder prediction 140 159 - -
Lele25g0623 194 MobiDBLite consensus disorder prediction 135 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0623 Lele-ChrLele25 3943687 3944375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0623 1 193 AP2-EREBP Transcription Factor Family AT5G25390 57.286 2.63e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele25g0623 AP2 1.9e-11 CL0081