Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0620 ATGACTGGATTTGCAGAACCAATGGGAGAAACTAAGGACGAAGGATATGAGGAAGAGCTTCTCGACTACGAAGAGGAAGAAGACAAGGCGCCCGATTCCGTTGGGACTAAAGTCAACGGTGAAGCTGCCAAGAAGGGATATGTCGGTATACATAGTTCGGGATTCAGAGACTTCCTGTTGAAGCCAGAACTTCTCCGGGCTATTGTGGACTCAGGATTTGAGCATCCATCTGAAGTTCAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTATTATGTCAAGCTAAATCTGGAATGGGGAAAACTGCGGTCTTTGTGCTTTCAACTTTGCAACAAATTGATCCTGTTGCTGGCCAAGTTTCTGCCCTTGTTTTGTGTCATACAAGGGAATTGGCTTACCAGATATGTCATGAGTTTGAGAGGTTCAGCACCTACCTGCCTGATCTCAAGGTTGCTGTTTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTAAAAAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATACTAGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGGCATTTCATTTTGGATGAATGTGACAAGATGCTGGAATCACTGGACATGAGGAGGGACGTTCAAGAAATTTTCAAGATGACTCCCCATGATAAGCAAGTCATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAGGATCCTATGGAAATTTATGTCGATGATGAGGCCAAGTTGACCCTTCATGGACTAGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGAAAGTTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTAGTCATCTTCGTAAAAAGTGTTAGTAGAGCTGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTCCCATCTATATGCATTCATTCTGGCATGTCCCAGGAGGAAAGGTTAAAGCGATATAAAGGTTTCAAAGAGGGGCATACTCGGATTCTTGTAGCAACAGATCTGGTTGGAAGGGGCATTGACATTGAACGTGTCAACATAGTCATAAACTATGACATGCCTGATTCTGCGGACACATACTTGCACAGGGTTGGCAGGGCAGGAAGGTTTGGCACCAAGGGCCTCGCGATTACATTTGTTTCATGTGCTGCAGATGTTGATGTTCTCAACAATGTTCAATCAAGGTTTGAGGTGGACATAAAACAGCTTCCTGAGCAGATTGATACCTCTACATATATGCCATCATAG 1305 0.4322 MTGFAEPMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0620 434 CDD DEADc_DDX39 52 259 - -
Lele25g0620 434 Pfam DEAD/DEAH box helicase 78 243 IPR011545 GO:0003676|GO:0005524
Lele25g0620 434 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 430 IPR001650 -
Lele25g0620 434 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 84 257 IPR014001 -
Lele25g0620 434 MobiDBLite consensus disorder prediction 1 37 - -
Lele25g0620 434 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 408 - -
Lele25g0620 434 SMART helicmild6 309 390 IPR001650 -
Lele25g0620 434 FunFam DEAD-box ATP-dependent RNA helicase 56-like 41 259 - -
Lele25g0620 434 FunFam DEAD-box ATP-dependent RNA helicase 266 434 - -
Lele25g0620 434 Gene3D - 49 265 IPR027417 -
Lele25g0620 434 SMART ultradead3 72 273 IPR014001 -
Lele25g0620 434 CDD SF2_C_DEAD 270 399 - -
Lele25g0620 434 Pfam Helicase conserved C-terminal domain 283 390 IPR001650 -
Lele25g0620 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 401 IPR027417 -
Lele25g0620 434 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 53 81 IPR014014 GO:0003724
Lele25g0620 434 MobiDBLite consensus disorder prediction 12 29 - -
Lele25g0620 434 Gene3D - 266 433 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0620 Lele-ChrLele25 3926715 3931521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0620 8 434 Eukaryotic Initiation Factors Gene Family AT5G11200 83.369 0.0 758