Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0611 ATGGATTCTCCTGATGTTACGAAGAAAACCCCCATTTCCATCGCCACTGCCGATGCTGTTTCTTCTTCTGAATCTCCTCATGTTCAAGAGTCCCCTTTTTTCAGCTTTGTAAACAATTTATCTCCAATAAAGTCTGTCAAGACTTCTCGTGTGGTTCAAGATTTCCTAGGACTAAATTCTCCCCCTATTGTCTTCACGTCACCACGTGTTAATCCCCATCTTGGATCCAGGTTCTTGGAGAGGCCTCAATGCTGTCAATCAGCCACTGTGGAAATTTCTCAAAGTGTTAATGGAGGCAAGTGCCTTGCTGATAATCCTGTTGATTCTGACAAATCTACTTCTTTATCGCCGGGATTTATAACTGATAGCAAGAATTGTTCAAGTACTCAGCGCTGCAGCTCTTCACCGTGTGTAGAATCTGTAGATGAATATTTAGCTGATCCTTCAGTTATTGATCATACGTCTTCGGGGCATTCAGTCAACCCCGACGTGGAGCAATCCAATGAGAATGTTGGATCATTACTAAATGACTCAACTCACTCAAAGAGAGCCATATCAAAAATTGATGACAAAAATGGTCCTGGTGACAATGTGAACGAACCTTTGCTTTTGGTAGAGGAGTCTGAAGGCAGCTATCGAGAAAAGACAAGACTAGTTGATGAAGCGGGGAAAGTAGAAGGGGAGAAAGCGGTTGAATGGCCTTCTCAAGCATGTGCAAAGTTAGAGTCTATTTTGTCTCCTGACCATGTTTTTGAGAAGCAACTTTCTGATGATTCAATTGTCCAGTGCACAGGAAATGAAATGCAGGATCGTCCTGACTGTACCTCTCAGTCGATGCTTGAGCCTTTGCTGGATGTAAAAGAATGTGAAGATGGTGGCGAGATGGGGACAACCTCTTATGTAAGTGTACAGAACATGTCACAGGACAGCGCCAAGGCCAGCCAAAAGCACCGAGGCCTGCGTAGACGTTGCCTTCAGTTTGAGGAGGCCGCGTCAAGTGCTTTTAGAAATTTGAACAGCTCCCCGCTTCAAGCCCATGTTCCCGAAGATTTAATACCATCTGCTAACTCCTCAGATTCAAAAGATTTAGAAGCTTGTCATGTTGCACTGAACGACACTTCAGCTGAAAAGAGAATGGCCAATCAGTCCAAACCTATCACTACCGCATTTTCTCCACGGTGTAGAAGCTTCCCTGTGAAAGGTTCCAAGCCATCAGGCATTGGGTTGCACTTAAATAGCATTGTAAATGCTATGCCCCATGGCCGTGCTGCATTTACAGGTATGAGACTAGCAGAGGGTTGTTCAGGTTTACAAGGCGGGAAGTTAGTTAGTTTACTAAGCTGCCGCAATGCTGAGGACCTAAACAGAGGCTTAATTTCATCAAACATGGACGAGAAACTGTCAGTTGGCAATAAATGTGAGAGGTACGAAAGGAATGCTTCAATAACTGCGGATTCTCTCCCCTCTGGGTCTCCGAGCTCTATAGAACCTGCAAATTTGTCAATGCACGTTGAGAATCCAGCAAATGTCCAAGATGACAGAAAATTAAGCTCTGTAGGTGATGGAAAATTTGAGGATTCCAATCAAACAAGCCCCAAAAAGAAAAAGAAGAGAACATCGAACCCCACTGATGATGACGGCTGTAAAAGGTGCAACTGTAAGAAGAGTAAATGTTTAAAACTTTACTGTGATTGCTTTGCAGCTGGATTATTTTGTGCTGAGTCTTGTGCTTGCCAAGACTGCTATAATAAACCAGAACATGGAGATTTAGTTCTCGAGACAAGGCAGCAAATAGAAACCCGTAACCCACTTGCATTTGCACCCAAGATTGTGCAGCATGTTACTGATTTTCCTTCAAATAATATGGACGATACCAATATAACGACACCATCATCGGCAAGACATAAAAGAGGTTGCAACTGTAAAAAGTCAATGTGCCTGAAAAAATATTGTGAATGTTATCAGGCTAATGTCGGATGCTCCAGTGGATGTCGATGCGAGGGATGTAAGAATGTCTATGGCAGGAAAGAAGAATACGTTCCCATGGAACATGCTTTGAGTGAAGAAAGGAGAGACAGAGCCGAAGAAGGATCAAATAGCACTCTTCACAGTAAGCTGGAAACGGAGGCAAAGAAGACGGATTTGTTGCAAGGAGAGTTGTATGATCTGCACTGCGTTTCTCCTCTAACACCGTCTTTGCAATACTCGGACCAAGGAAAGCAAGCTGCAAATTTACGAGCTCCTTTTGGGAAATATCTTCCAGCCACAGAGATGATAAGAAATGTCTCGAATGATTGCCAACAAGATAGCAACAACATGGAAATAATGGATCAATCATCACCAAGATGTAATTCAGTTGCCAAAGTAGGCCAGCTCACTATTTCTAATTCTCAGTCATTCTCTAGTGCTTCCTTCTCATCTAAAAAAAGGGACCAGACGCATATGCCATGTGTTCTATCAGGCGGTTCCCTTCGGTGGCGTAGTTCCCCAATCACCCCGATGACGAAATCAGGTGAAACTAAATCTCTACAGTGTCTTGAATCGGAGAGCAGACTATATGACATTCTAGAAGATGAAACTCCTGAGATGTTGAAGGAAACTTCTACTCCCATTAAGTCTGTGAAAACAAGTTCGCCTAAGCAGAAGCGAGTTTCTCCTCCTCACGGTCATCTACGTGAACTTGGTTCAAGTTCTTCAGGAGGCTTGAGAAGTGGCAGGAAATTTATACTGAAAGCTGTACCTTCTTTCCCACCACTGTCCCCATGCATTGTTTCTAAAGCCAGTGATCATGGGAATTCAGAGAATGGCAAGTGA 2814 0.4346 MDSPDVTKKTPISIATADAVSSSESPHVQESPFFSFVNNLSPIKSVKTSRVVQDFLGLNSPPIVFTSPRVNPHLGSRFLERPQCCQSATVEISQSVNGGKCLADNPVDSDKSTSLSPGFITDSKNCSSTQRCSSSPCVESVDEYLADPSVIDHTSSGHSVNPDVEQSNENVGSLLNDSTHSKRAISKIDDKNGPGDNVNEPLLLVEESEGSYREKTRLVDEAGKVEGEKAVEWPSQACAKLESILSPDHVFEKQLSDDSIVQCTGNEMQDRPDCTSQSMLEPLLDVKECEDGGEMGTTSYVSVQNMSQDSAKASQKHRGLRRRCLQFEEAASSAFRNLNSSPLQAHVPEDLIPSANSSDSKDLEACHVALNDTSAEKRMANQSKPITTAFSPRCRSFPVKGSKPSGIGLHLNSIVNAMPHGRAAFTGMRLAEGCSGLQGGKLVSLLSCRNAEDLNRGLISSNMDEKLSVGNKCERYERNASITADSLPSGSPSSIEPANLSMHVENPANVQDDRKLSSVGDGKFEDSNQTSPKKKKKRTSNPTDDDGCKRCNCKKSKCLKLYCDCFAAGLFCAESCACQDCYNKPEHGDLVLETRQQIETRNPLAFAPKIVQHVTDFPSNNMDDTNITTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNVYGRKEEYVPMEHALSEERRDRAEEGSNSTLHSKLETEAKKTDLLQGELYDLHCVSPLTPSLQYSDQGKQAANLRAPFGKYLPATEMIRNVSNDCQQDSNNMEIMDQSSPRCNSVAKVGQLTISNSQSFSSASFSSKKRDQTHMPCVLSGGSLRWRSSPITPMTKSGETKSLQCLESESRLYDILEDETPEMLKETSTPIKSVKTSSPKQKRVSPPHGHLRELGSSSSGGLRSGRKFILKAVPSFPPLSPCIVSKASDHGNSENGK 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0611 937 MobiDBLite consensus disorder prediction 860 903 - -
Lele25g0611 937 MobiDBLite consensus disorder prediction 866 883 - -
Lele25g0611 937 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 637 671 IPR005172 -
Lele25g0611 937 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 549 584 IPR005172 -
Lele25g0611 937 MobiDBLite consensus disorder prediction 509 547 - -
Lele25g0611 937 SMART CXC_2 634 675 IPR033467 -
Lele25g0611 937 SMART CXC_2 546 587 IPR033467 -
Lele25g0611 937 MobiDBLite consensus disorder prediction 915 937 - -
Lele25g0611 937 ProSiteProfiles CRC domain profile. 547 674 IPR005172 -
Lele25g0611 937 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 19 926 IPR044522 GO:0003700
Lele25g0611 937 MobiDBLite consensus disorder prediction 516 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0611 Lele-ChrLele25 3873186 3877965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0611 526 677 CPP Transcription Factor Family AT3G22760 62.092 1.51e-59 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lele25g0611 TCR 3.9e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0611 25 3873186 3877965 Lele27g1476 27 20817053 20824763 hybridization
Lele25g0611 25 3873186 3877965 Lele28g0607 28 3897165 3902112 hybridization