Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0603 ATGAAGAATCTGTTTGCCCATTCAATCTGTTGCAGCAGAGGAGACGAGCAAGAGATTGAGCTTGAGCAAATGTCCAGGGACGAGGGCAGCCATTACAGCCTCCCTCTTCCTTCTCTTGGCGCAAGTGCCGCCAGCACCAGTCGCCGACCCAAGCTCCGATCCTTCATCATCTCTCCGTTCAACCCTCGTTACAGTTCTTATCTGTTCATCGACAACCCGAAACTGATTGCACTGAGATACGCCAAAACCTGCCTGTTCTTTGATGTCATCTCTACCATCCCTTTTGAACTTGCTCGCATAGTATTGCCCACACCTCTTCAGACATATGGGCTCTTTAACATACTGCGTCTTTGGCGTCTCCGTAGAGTCGGTGCTATGTTTGCCAGATTAGAAAAGGACCGGAATTTTAACTACGTCAGGATCCGCTGTTCAAAGCTGATATGTGTTACAGTGTGTACAGTGCATTTTGCCGCCTGTTTTTTCTATTTTCTTGCTTCAAATCATGACATAAAAACCACATGGTTTAGCCTAGTTGCTAATGGCGACCAGATGCATCTGTGGGGACACTATGTAACATCAGTATACTGGGCCTTAGTTACCATGTCGACCAGAGACACTGTTCAAGCTGCCACTGGTTTTGCACAACGGAACCAATTGCCTGTCCGCTTGCAAGAGCAGATGCTTGCTCATTTGTTTATGAGATCATCTCATGAGCATGTCTTCAACTTTTTAAAGGTCTCTGAAATGAATGCTGAGTACTTTCCTCCAAAGGAAGATTTGATTTTACAGAATGAAGCACCAACAGACTTTTATATATTGGTTACCGGCGCAGCTGTAGGAGATGTAGTTGGAGAGATAGGCGTGCTATGCTACAGGCCACAACACTTCACAGTTCGAACCAAACGATTGAGCCAGCTTCTACGTCTAAATCGCACTGCATTTCTAAATCTTGCTCATTCAAATGTTGGAGATGGGACGATAATCATGAGTAATTTTCTTCAGCATTTGAAGGAATCAAGTGATCCAATGATGGAGGGAATTTTGGCAGAAACGGAGGCCATGCTTGCTCGGGGCAGAATGGATTTGCCTATCAGTCCATGCTTTGCTGCAAACAGAGACGATGATATTTTGTTGCATCAGTTGCTGAAGAGGGGTTCAGATCCAAATGAATCAGATAAAAATGGAAGGACGTCACTGCACATTGCCGCATCTAGGGGCAACGAACACTATTTAAATGGAAGTATCCCACTATGGGAAGCAATGTTGGGAGGGCATGAATCGGTGATAAAGTTTCTGATGGACAATGGTGGAGACCTATCCTGTGCGGATGTAGGGCATCTGGCATGCTCTGCAGTGGAGCAAAACAACTTGGAATTGCTCAAAGAAATTGTAAGATATGGTGGTGACGTGACGCAGCCCAGAACCAACGGCAAAACAGCACTTCACACGGCAGTATGCGATGGAAACACTGAGATAGTGAAGTTCCTTGTACAGCAAGGAGCAGATATTGATCGGCCAGACGTTCATGGATGGACTCCTCGGACTCTGGCAGATCATCAAGTCCATGAAGATATCATGGAGATGTTCCGCAACATCCGAGAGGGCAAAAAACCCCAAGTTATTCCCACGACGATGAATTATTCCAAGTGCCTCAGGAAGTTTCATAGTGAACCAACTACGCGTGCCCCTCAAGACGTGAATTGGTTGCCGAATCATCCAAGGCGAAGAGCCAACCATTTTCACAATTCTTTCTTTGGGATCATGTCGGCTGCTGCCAACCGTGATCCATCCCATGCATCATCACAAGACAATGATGATGTTGCAGAGAACCTGAATGGATTCGCAGCGAGAGTAGTTGTGAGTTGTCCAGAAAAAGGGGAACGTGGTGGGAAGCTCGTGTTTCTGCCAAAGTCCCTTGAAGAACTGATAGACATAGGTGTGAAAAAGTTCGACTTTTTGGCCAACAAAATTTTGACTAAAGGAGGAGCTGAGATTGAGGATATAAAGCTTATAAGAGATGGAGATCATCTCATTCTCGCACGTGATAGATCTCTTGAGCCCGATGAAGAAGGCAGGTAG 2079 0.4579 MKNLFAHSICCSRGDEQEIELEQMSRDEGSHYSLPLPSLGASAASTSRRPKLRSFIISPFNPRYSSYLFIDNPKLIALRYAKTCLFFDVISTIPFELARIVLPTPLQTYGLFNILRLWRLRRVGAMFARLEKDRNFNYVRIRCSKLICVTVCTVHFAACFFYFLASNHDIKTTWFSLVANGDQMHLWGHYVTSVYWALVTMSTRDTVQAATGFAQRNQLPVRLQEQMLAHLFMRSSHEHVFNFLKVSEMNAEYFPPKEDLILQNEAPTDFYILVTGAAVGDVVGEIGVLCYRPQHFTVRTKRLSQLLRLNRTAFLNLAHSNVGDGTIIMSNFLQHLKESSDPMMEGILAETEAMLARGRMDLPISPCFAANRDDDILLHQLLKRGSDPNESDKNGRTSLHIAASRGNEHYLNGSIPLWEAMLGGHESVIKFLMDNGGDLSCADVGHLACSAVEQNNLELLKEIVRYGGDVTQPRTNGKTALHTAVCDGNTEIVKFLVQQGADIDRPDVHGWTPRTLADHQVHEDIMEMFRNIREGKKPQVIPTTMNYSKCLRKFHSEPTTRAPQDVNWLPNHPRRRANHFHNSFFGIMSAAANRDPSHASSQDNDDVAENLNGFAARVVVSCPEKGERGGKLVFLPKSLEELIDIGVKKFDFLANKILTKGGAEIEDIKLIRDGDHLILARDRSLEPDEEGR 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0603 692 SUPERFAMILY Ankyrin repeat 369 531 IPR036770 -
Lele25g0603 692 Pfam KHA, dimerisation domain of potassium ion channel 617 679 IPR021789 -
Lele25g0603 692 SMART cnmp_10 231 333 IPR000595 -
Lele25g0603 692 ProSiteProfiles cAMP/cGMP binding motif profile. 280 335 IPR000595 -
Lele25g0603 692 SUPERFAMILY Voltage-gated potassium channels 77 203 - -
Lele25g0603 692 Pfam Ankyrin repeats (3 copies) 448 528 IPR002110 GO:0005515
Lele25g0603 692 PANTHER POTASSIUM CHANNEL AKT1 231 681 IPR045319 GO:0005249|GO:0006813
Lele25g0603 692 Pfam Ion transport protein 69 204 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele25g0603 692 Gene3D - 57 213 - -
Lele25g0603 692 ProSiteProfiles cAMP/cGMP binding motif profile. 246 276 IPR000595 -
Lele25g0603 692 ProSiteProfiles Ankyrin repeat region circular profile. 412 443 - -
Lele25g0603 692 ProSiteProfiles Ankyrin repeat profile. 412 444 IPR002110 GO:0005515
Lele25g0603 692 SUPERFAMILY cAMP-binding domain-like 203 336 IPR018490 -
Lele25g0603 692 FunFam Potassium channel KAT2 226 340 - -
Lele25g0603 692 ProSiteProfiles KHA domain profile. 617 692 IPR021789 -
Lele25g0603 692 Gene3D Jelly Rolls 223 339 IPR014710 -
Lele25g0603 692 ProSiteProfiles Ankyrin repeat region circular profile. 476 507 - -
Lele25g0603 692 CDD CAP_ED 246 321 IPR000595 -
Lele25g0603 692 Gene3D - 363 531 IPR036770 -
Lele25g0603 692 ProSiteProfiles Ankyrin repeat profile. 476 508 IPR002110 GO:0005515
Lele25g0603 692 Pfam Ankyrin repeats (many copies) 381 411 IPR002110 GO:0005515
Lele25g0603 692 PRINTS Ankyrin repeat signature 395 410 IPR002110 GO:0005515
Lele25g0603 692 PRINTS Ankyrin repeat signature 492 506 IPR002110 GO:0005515
Lele25g0603 692 SMART ANK_2a 476 505 IPR002110 GO:0005515
Lele25g0603 692 SMART ANK_2a 443 472 IPR002110 GO:0005515
Lele25g0603 692 SMART ANK_2a 412 441 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0603 Lele-ChrLele25 3829155 3833693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0603 65 682 Ion Channels AT2G26650 47.333 0.0 647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0603 25 3829155 3833693 Lele27g1483 27 20863181 20867923 hybridization
Lele25g0603 25 3829155 3833693 Lele28g0601 28 3854795 3862432 hybridization