Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0600 ATGTCTACGAGGTCTCGTAGCAGATTATGGAGTTCCGTTGACGGTTGTAAGGCTGTGTTTTGTCCCCTTCCTTGGGAATCTGTGTCTCTCTACCACTGGACGGTAGTGAAGGATATGTGCAAGGTGCCTGTGGTTTATATTTTTGCTGCAATTGTTCCAGCTGTGATGATAGCAGGATTATACTTCTTTGATCATAGTGTAGCCTCCCAGATGGCTCAACAGAAGGAGTTCAACCTTCAAAAGCGATCAGCCTACCACTATGATATGTTTTTGCTTGGAATTTTGACTCTTATTTGTGGTCTTCTTGGCTTCCTCCATCAAATGGAGTCCTTCCTCAGTCTCCAATGCATACAAAAAGTATGGCGGTTCTTAAGAGGCAGGATCTTTTTCAGATGA 396 0.4369 MSTRSRSRLWSSVDGCKAVFCPLPWESVSLYHWTVVKDMCKVPVVYIFAAIVPAVMIAGLYFFDHSVASQMAQQKEFNLQKRSAYHYDMFLLGILTLICGLLGFLHQMESFLSLQCIQKVWRFLRGRIFFR 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0600 131 Pfam HCO3- transporter family 34 104 IPR011531 GO:0006820|GO:0016020
Lele25g0600 131 PANTHER ANION EXCHANGE PROTEIN 13 103 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0600 Lele-ChrLele25 3826183 3826820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0600 17 104 Antiporters AT5G25430 79.545 1.42e-46 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0600 25 3826183 3826820 Lele02g0608 02 3640864 3646103 CCT
Lele25g0600 25 3826183 3826820 Lele04g0625 04 3781717 3785017 CCT
Lele25g0600 25 3826183 3826820 Lele27g1484 27 20869248 20874713 hybridization
Lele25g0600 25 3826183 3826820 Lele28g0600 28 3849349 3853808 hybridization