Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0594 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCCGATCCTGTTGCTATTGATGCTCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACACAGTTACTTAAGGGAAGGGAGCCGCAGCCGCAGCCACAGCCACAGCCACAGCCACAACCTCAGCAGTCACAGCAGCAGCAGCAGCAGCAACACATGCAGATCCAACAGCTCCTGATGCAGAGGCATGCACAACAGCAGCAGCAGCAGCAGCAACAACAACAGCAACAACAGCAGCAGCAGCAGCAACAACAACAACAACAGCCCCAGCAACAGCAGCCACTGCCGCAACAGCAGAGAAGGGATGGGCCTCATCTCTTAAATGGCAGTACAAATGGGATGGTTGAGAACCCACTAATGCGGCAAAACCCTGGTACTGCGAATGCACTGGCCACAAAGATGTATGAGGAAAGGTTAAAACCGCCTCTTCAGAGGGATTCTTTGGACGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCTCCATATTGAAGTCAGCTGCAGCTTCTGGCCAACCTTCAGGGCAAGTGTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTGCTCCGGATATAAAGAGCGAGATAAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCAAATCAAGGTAGCAACAATTTGACTCTCAAAGGGTGGCCACTTAAAGGGTTGGATCAACTACGTTCTGGTCTTCTCCAACCACAAAAGGCTTTTATGCAGGGCCCTCAGCCCTTTCATCAAATTCAAATGTTGTCGCCACAACATCTTATGCTTGCTCAACAAAATCTTGCATCACCATCTGCCACTGACGAAAATAGACGACTTAGAATGCTTTTGAATAATCGGAATATGGGTCTGAGTAAGGATGGTCTTTCAAACCCCATGGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAGCTCTCTTTTGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTACATCAGCAGCATCAACAACAGAATACCAATCCACAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAGTTTTAACATGCATCAGCAAGACAAAGTTGGGGGCATTAGTAGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTTAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACGACTGGCCCATCTCCAAGTTCAGCACCCTCAACCCCTTCAACTCATACTCCTGGAGATGTAATATCGATGCCTGCTGTGCCTCATAATGGTAGTTCTTCAAAGCCCCCTATGATGTTTGGCACTGATGGCACTGGAACTCTTACATCACCTTCAAATCAGTTGGCTGACATGGATCGATTTGTTGATGATGGATCTCTTGATGACAATGTCGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGTATGGATATAAGCAAAGGCTTCTCATTTGCTGAAGTCAATTCTGTGCGAGCTAGTTCAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCACAGATTCTCTAAAGCCAAAAGCTACTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTTAGTCCAAGCATGCCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACTCTTCGCACCTTCACAGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGATCTTGTCTGCTCTTGTGATGGCGATGGTGAAATACGATATTGGAGCATAAATAATGGCAGCTGTGCTAGAGTCTCTAAGGGTGGCACCGCCCAGATGAGGTTTCAACCTCGCACAGGGAGGTATCTTGCCGCTGCTGCAGAGAACGTTGTCTCTATACTTGATGTGGAAACACAAACATGCCAATATTCATTACAGGGTCATACAAAGCCAATTCATTCTGTTTGCTGGGACCCTGCTGGGGAGTTGCTTGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCTGGGAGTGAAGGACAATGTGTCCATGAACTGAGCTGTAATGGGAATAAATTTCATTCTTGCGTTTTCCATCCAACATATTTTTCGTTGTTGGTCGTCGGTTGTTACCAGTCTATGGAGCTTTGGAACATGGTGGAGAACAAGACGATGACTCTGTCGGCTCACGAAGGACTAATCGCTTCCTTGGCAGTCTCAAATGTGACTGGTTTGGTTGCTTCAGCAAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2685 0.4574 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREPQPQPQPQPQPQPQQSQQQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQQQQQQQQQQQQQPQQQQPLPQQQRRDGPHLLNGSTNGMVENPLMRQNPGTANALATKMYEERLKPPLQRDSLDDAAMKQRFGENMGQLLDPSHASILKSAAASGQPSGQVLHGVGGGMSQQVQARSPQLPGSAPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPQKAFMQGPQPFHQIQMLSPQHLMLAQQNLASPSATDENRRLRMLLNNRNMGLSKDGLSNPMGDVVSNVGSPLQAGSSLLPRGDTDMLMKLKLAQLHQQHQQQNTNPQQQQLQQHALSNQQSQTSSFNMHQQDKVGGISSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPHNGSSSKPPMMFGTDGTGTLTSPSNQLADMDRFVDDGSLDDNVESFLSHDDTDPRDAVGRCMDISKGFSFAEVNSVRASSSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKPKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTLRTFTGHSASVMSLDFHPNKDDLVCSCDGDGEIRYWSINNGSCARVSKGGTAQMRFQPRTGRYLAAAAENVVSILDVETQTCQYSLQGHTKPIHSVCWDPAGELLASVSEDSVRVWTLGSGSEGQCVHELSCNGNKFHSCVFHPTYFSLLVVGCYQSMELWNMVENKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0594 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 641 IPR001680 GO:0005515
Lele25g0594 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 817 IPR001680 GO:0005515
Lele25g0594 894 Coils Coil 115 148 - -
Lele25g0594 894 FunFam Transcriptional corepressor LEUNIG 589 740 - -
Lele25g0594 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 695 733 - -
Lele25g0594 894 FunFam Transcriptional corepressor LEUNIG 741 894 - -
Lele25g0594 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 687 IPR001680 GO:0005515
Lele25g0594 894 Gene3D - 740 894 IPR015943 GO:0005515
Lele25g0594 894 Pfam WD domain, G-beta repeat 610 641 IPR001680 GO:0005515
Lele25g0594 894 Pfam WD domain, G-beta repeat 857 894 IPR001680 GO:0005515
Lele25g0594 894 Pfam WD domain, G-beta repeat 772 807 IPR001680 GO:0005515
Lele25g0594 894 Pfam WD domain, G-beta repeat 647 684 IPR001680 GO:0005515
Lele25g0594 894 Pfam WD domain, G-beta repeat 691 728 IPR001680 GO:0005515
Lele25g0594 894 MobiDBLite consensus disorder prediction 101 121 - -
Lele25g0594 894 Gene3D - 589 739 IPR015943 GO:0005515
Lele25g0594 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 894 IPR001680 GO:0005515
Lele25g0594 894 MobiDBLite consensus disorder prediction 144 184 - -
Lele25g0594 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 862 894 - -
Lele25g0594 894 SMART Lish 8 40 IPR006594 GO:0005515
Lele25g0594 894 MobiDBLite consensus disorder prediction 419 544 - -
Lele25g0594 894 CDD WD40 606 894 - -
Lele25g0594 894 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 894 - -
Lele25g0594 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 687 - -
Lele25g0594 894 SMART WD40_4 770 808 IPR001680 GO:0005515
Lele25g0594 894 SMART WD40_4 645 684 IPR001680 GO:0005515
Lele25g0594 894 SMART WD40_4 814 853 IPR001680 GO:0005515
Lele25g0594 894 SMART WD40_4 855 894 IPR001680 GO:0005515
Lele25g0594 894 SMART WD40_4 603 642 IPR001680 GO:0005515
Lele25g0594 894 SMART WD40_4 688 728 IPR001680 GO:0005515
Lele25g0594 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 695 737 IPR001680 GO:0005515
Lele25g0594 894 SUPERFAMILY WD40 repeat-like 605 894 IPR036322 GO:0005515
Lele25g0594 894 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lele25g0594 894 ProSitePatterns Trp-Asp (WD) repeats signature. 671 685 IPR019775 -
Lele25g0594 894 MobiDBLite consensus disorder prediction 87 121 - -
Lele25g0594 894 MobiDBLite consensus disorder prediction 419 525 - -
Lele25g0594 894 Pfam LisH 10 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0594 Lele-ChrLele25 3774568 3781852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0594 689 893 Miscellaneous Gene Families AT5G08390 25.714 5.22e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele25g0594 WD40 0.069 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0594 25 3774568 3781852 Lele01g0611 01 3585976 3589511 CCT
Lele25g0594 25 3774568 3781852 Lele02g0599 02 3588250 3597596 CCT
Lele25g0594 25 3774568 3781852 Lele03g0612 03 3598226 3605464 CCT
Lele25g0594 25 3774568 3781852 Lele04g0617 04 3728120 3735580 CCT
Lele25g0594 25 3774568 3781852 Lele27g1488 27 20917870 20925157 hybridization
Lele25g0594 25 3774568 3781852 Lele28g0595 28 3802471 3809445 hybridization