Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0589 ATGTCCATGCTGAGAATGGCGCAGCATAACAATGGCAATCACAGTTCGAGCCAACAGTCAGTGAAACCAGTCTTTCATGACTTTATGGGCATGAAGCCCACTGATTCGCCCCTCGTTGCGGCCCCTAAAACCGATGAAGCGAGGCCGTCGGAGGCGTCGCCATCGGTCTCTGTTGGCGCCTCTTCCGGTGTTGCTCGTGGCCCCCTCTCAACCACCTCTGATATCGCTGCTGAAAGGCAGTTAGGAAATCGCCTCGAGGGAGTCCCATTCTATTGCCCGAGGGGTGATCTTTCTGGCACTGAGATTAGTAACAGAATAGTAGGAAACAAGAGAAGTAATTCTGATTCCAGTTTTATGAGTTCCTCCAGAGATGCCTTCCAAATGGTTCCTGACTCTCTGCAAAATTTGCATTTAATGAAGATCCTCCAGAATGCAGCTGGAGGAGAGCAGCATAGAAGGTCTAATGATGGTAATGTGTTTCTTGGTATGCAGTCAAGGAAGCCAACTTCTTCTCACATATATCAGCCTTCCACGGGCACGAACACTGATGCCAATAAATGGGAGCGATCTATTCTCATGGATACTGGCTCTTCCATGCAACATACACCACAATTACCATCTTTTGTGCATCGGATGCCTTCTAACAAGAGCAGTGATGCTAATGCTGGTCCTTCATTTATTTCTCAATCCGCTTCTGATGAAGGATCTAGAACAGGAATCAAGGGCCCTGGGATCTTGAGTTCTATGAACCCTACCACTGCTGCTTATGGGAAATCTCTGTCTGCACTTGGCGGAAACAGACCAAAGCCATTGACTTGTATAATAGACCCAGAATCTTCCATGCCTCCAAGTCAACAAGGGTTAGCACCTGCCAGCTGCCAGATGACTATTTTTTATGGAGGTCAAGCTCACGTTTTTGATAATGTTCACCCCAATAAGCTAATTTATGTACCATCTGTGAGGAAACATACAATTGGGAACTTCCAAATTCCAAGTCCAGTTGAATTGCTTCGCCTTTTGGATTACTGTGGAATGAATGACCATGCAGAAATTATAATGGCTTTAGCTGGGTCAAATGGTGGATATTGTCTTTGGCGGGCACTTCTAGTCTTGCGATCAAATCTGGCAATCGATTGCCTACTCAAGCAGTGGCACATCAGGGAAGCATTGCAGCCAATGAAGGTGTCAGGAATTCAATTAAAGCATCGGATCCCAGTCCTGAGGACAAAAGGACGCAATCTCATTGAACCTCTCCCAGTCTATAATCTGAACTGTGGTCGGTTCCCATTGATTATAGAGCTTGTTCTTATTCGTAATACTGTCTGA 1326 0.46 MSMLRMAQHNNGNHSSSQQSVKPVFHDFMGMKPTDSPLVAAPKTDEARPSEASPSVSVGASSGVARGPLSTTSDIAAERQLGNRLEGVPFYCPRGDLSGTEISNRIVGNKRSNSDSSFMSSSRDAFQMVPDSLQNLHLMKILQNAAGGEQHRRSNDGNVFLGMQSRKPTSSHIYQPSTGTNTDANKWERSILMDTGSSMQHTPQLPSFVHRMPSNKSSDANAGPSFISQSASDEGSRTGIKGPGILSSMNPTTAAYGKSLSALGGNRPKPLTCIIDPESSMPPSQQGLAPASCQMTIFYGGQAHVFDNVHPNKLIYVPSVRKHTIGNFQIPSPVELLRLLDYCGMNDHAEIIMALAGSNGGYCLWRALLVLRSNLAIDCLLKQWHIREALQPMKVSGIQLKHRIPVLRTKGRNLIEPLPVYNLNCGRFPLIIELVLIRNTV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0589 441 Pfam tify domain 290 313 IPR010399 -
Lele25g0589 441 ProSiteProfiles Tify domain profile. 288 323 IPR010399 -
Lele25g0589 441 SMART tify_2 288 323 IPR010399 -
Lele25g0589 441 MobiDBLite consensus disorder prediction 157 183 - -
Lele25g0589 441 MobiDBLite consensus disorder prediction 147 183 - -
Lele25g0589 441 MobiDBLite consensus disorder prediction 213 236 - -
Lele25g0589 441 MobiDBLite consensus disorder prediction 50 73 - -
Lele25g0589 441 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 98 361 IPR040390 -
Lele25g0589 441 MobiDBLite consensus disorder prediction 213 246 - -
Lele25g0589 441 MobiDBLite consensus disorder prediction 27 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0589 Lele-ChrLele25 3749351 3752820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0589 6 313 Tify Gene Family AT4G32570 35.604 3.58e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele25g0589 tify 2.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0589 25 3749351 3752820 Lele01g0607 01 3569233 3573245 CCT
Lele25g0589 25 3749351 3752820 Lele02g0598 02 3580301 3584184 CCT
Lele25g0589 25 3749351 3752820 Lele03g0610 03 3587594 3591775 CCT
Lele25g0589 25 3749351 3752820 Lele04g0616 04 3722100 3725937 CCT
Lele25g0589 25 3749351 3752820 Lele27g1492 27 20946788 20950099 hybridization
Lele25g0589 25 3749351 3752820 Lele28g0591 28 3777548 3781128 hybridization