Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0581 ATGCCTGTCAAATCGGCGCAGTCATCGTATCGGGATCGGACGCAGGAATTTCAGAGTATAGCAGGGAGACTAAAAAAGTCAGTGTCATCCGGATCAGGACCAAGCGGGCCAAGCAGTAGTTCAAGATCGGATGAACAGCGATCTGCGATCGCAATTCAGTCAGAATTCAATAGGAGGGCTTCCAAGATTGGTTATGGGATACATCAGACATCACAGAAACTTGCTAAGCTGGCCAAGCTGGCAAAAAGGACTTCGGTTTTTGATGACCCCACCATGGAAATCCAAGAGCTCACAGCTGTTATTAAGCAAGATATCACTGCACTGAACTCTGCCGTTGTGGACCTTCAGCTAATCAGCAACGCTAGAAATGACAGTGGAAATATCTCTAGTGACACAACTAGTCATTCAACCACAGTTGTGGATGACCTTAAAACCCGATTGATGAGTGCCACAAAAGAGTTCAAAGAAGTCCTCACCATGCGAACAGAGAACTTGAAGGTACATGAGAATAGAAGACAGCTGTTTTCTTCCACTGCTTCTAAGGAAGCTGCGAATCCTTTTGTTCGTCAGCGTCCCTTGGCTGCAAGGTCAGCTGCCAATGCCCCTGCACCCCCATGGGCTAGTGGATCAACATCTTCATCTCAGTTACTTCCAAAGAAGCAAGTGGACGGGGAGAGTCAACCATTGCTGCTGCAGCAGCAGCAACAATTGGTTCCATTGCAGGATTCATATATGCAGAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGTTGAGCAGCATTTTTAACCAATTGGCTACACTGGTTTCCCAACAAGGGGAAATTGCCATCAGGATTGATGAGAATATGGACGATACGTTGGCAAATGTAGAAGGGGCGCAGGGGGCTTTGCTAAAATATCTGAACAGTATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTAATATTTTTTCTCATGGTTTTCCTATTTTTTGTGGCATAA 1005 0.4507 MPVKSAQSSYRDRTQEFQSIAGRLKKSVSSGSGPSGPSSSSRSDEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLISNARNDSGNISSDTTSHSTTVVDDLKTRLMSATKEFKEVLTMRTENLKVHENRRQLFSSTASKEAANPFVRQRPLAARSAANAPAPPWASGSTSSSQLLPKKQVDGESQPLLLQQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0581 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele25g0581 334 SUPERFAMILY t-snare proteins 54 297 IPR010989 GO:0016020|GO:0016192
Lele25g0581 334 SMART tSNARE_6 237 304 IPR000727 -
Lele25g0581 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
Lele25g0581 334 PANTHER SYNTAXIN 50 326 IPR045242 -
Lele25g0581 334 MobiDBLite consensus disorder prediction 194 216 - -
Lele25g0581 334 Gene3D - 51 297 - -
Lele25g0581 334 Pfam SNARE domain 278 330 IPR000727 -
Lele25g0581 334 CDD SNARE_syntaxin5 245 323 - -
Lele25g0581 334 MobiDBLite consensus disorder prediction 21 47 - -
Lele25g0581 334 FunFam Syntaxin-32 like 50 297 - -
Lele25g0581 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0581 Lele-ChrLele25 3699804 3702796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0581 1 334 SNARE and Associated Proteins AT3G24350 64.820 6.30e-150 424