Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0562 ATGAGTAGGCCAACTACACGAAGTAAAAATAAAAGACAAAGACAAGTGGATGATGGTGCTAGCACTTCTGAAATATGGAGGAAAATTCATGAAACTTGTGTGGTAACTGATGATGACACAAATCAACTTTATATGATTTGGAAGCCAATCTGTTCAAGCTGCCGTGTCAATACCAAAGACAACCCTAATTGCTTTTGTGCGTTGGTTCCACCTCCCAATGGAAACCGGAAATCTGGCTTATGGCAGAAGATATCAGGTATTGTAGACAATCTTGGTCCTGACCCAACCAAGGACCTTCGTGCATCTGCTAATTCACCTGCTGGTCTTACAAATCTTGGGGCCACATGCTATGCCAACAGCATACTGCAGTGCTTATACATGAATAAATGTTTCCGGGAAGGCATATTTTCTGTAGAACCAGATCTTTTGCAACAGCAGCCTGTGTTAAATCAACTGGTGCGGCTTTTTGTGCAGTTGCACATTAGTAAAAGGGCTTTTGTGGATTCATTTCCGTTTGTCAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTTCTTACATTGCTTTTGTCTTTGCTCGAGTGTTGTCTAAGCCATTCTGAAGTTCCTAAAGCAAGAACGGTAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAACCTGCTCACAATGTGGAAGAGACTCTGAAGCATCTTCTAAAATGGAAGACTTCTATGAGTTGGAGTTAAATGTCAAGGGATTTAAAAGTTTAGATGAGAGCATGAATGATTATCTTGCTGCGGAGGAGCTTTGTGGGGATAATCAATATTTTTGTGCATCGTGTAAAACAAGAGTGGATGCTACTCGTAGCATCAAGCTGCGCACATTACCTTGTGTACTTAATTTTCAACTTAAACGTTGTGTCTTCCTTCCAGAGACTACAACAAGGAAGAAAATTACTTCTGAATTTTCATTTCCAGCTAAGCTTGACATGCAACCTAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTATCAGCTGTACTGATTCACAAGGGAACTACTGTTAATAGTGGCCATTATGTAGCTCACATCAAGGACGAGAATACTGGGCAATGGTGGGAGTTTGATGATGAGCATGTCACTAAATTAGGCTGTCATCCATTTGGTGAAAGATCTTCAAATTCTACAGCAAAATCCGTTAGGACTGATCCCATTTATTCTGATGCCTCTGAAGTGAGGATAGCTGACAGTAATGGAAATGGTCTAGATGCCTCTCACTCACAATCTTCTCTTGTGGAGACATTTTCATCTAGCGATGCATACATGTTGATGTACAATCTTGAGCATACCAAAAATGTAGTCAAAATGGGGGAGCTCAGCAGTGATGATGCTGTTCCTGCACGATATAGTTTTCCTCTTTTAACTCATCTTTTTGACGAGATTAAGAACCTTAATGCTTCATATGTTGATGAGTGTGCACAGTACAATCAAAGGAAAGAGTTGGAACTAAGTCGAATTAATGAAAGGAGACAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTTGAGCAACCATTTTATTGGATTTCTAGTGAATGGCTTCGCCAGTGGGCTGACAACATTAGGCCAAGCACTCTTGACAATACATCCATTCAATGCTCACATGGGAAAGTTTCTGTATCCAAGGTTACTTCGATAAAGCGATTGTCCGATAAGGCGTGGGATAAATTGTTTACAAAGTATGGTGGGGGGCCTACACTGTCCCATGGTGATTGCTGTTGGGATTGTCTTATTGATGGAGCTCACTCTGTGGTGTCGGCTGACACCTATCGGGACCGAAGAGAATCAATGAAGCAACTTGCGCGGGATATTCTTGACGGAAATTGTCCAGATGGAAAGTATTACGTATCTAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTACTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCATCAATTAGTTGCCCGCATGGGCAACTTTTACCTGAGCAAGCTCATGGTGCTAAGCGGGTGCTTGTTCCTGAGAGTCTTTGGCACTTCTTATATGAAGATGCTCTTTCTGTAAAGCCTGATGATGCTTTGGGTTGCCCAGCATTTCCTTCAGACTCAATGCCTTGTTCCCAATGCAGTGATGAATTATCTGAAGTAGCATGCTTGGAGGACTCTTTAAGATTAGTGAAGCAAGTGCACCGTCAGAATCATGAGAAACTATTACTGGCTAAAATTATACCACTCTCATTGCATTGCAAATATTTCCTAGTTCCTTCTTCATGGATTTCAAAATGGAGAAGTTACATGAGTCCATCCGTCAAGAATTCAGACAAGCCTGAAACTTTAGATGGGATAATCAATTCCCTCATGTGTGTAAAGCACTCCCTCCTTGTGGAAAAGCCTCCAGAACTGGTATTCAGACGCGGTACTATAGTCCAGCGAGAATCTTCTGCAGGTGGTTTAACTATGATATCTGAGAATGATTGGAAATGCTTTTGTGAGGAATGGGGTGGTACTGAGACAAAAGGTATATCAGCAACAATTGAGAATTCCAGTCATTCCGAGAATATTTTGACTGGATTCAGCTCAGAGACACAGATATGTGAGGATCAGTTGAATGATAAAGTGAATAATGATAGCGGGACTAGACAGCTGGTGATTAAGACTTGTCCAGAGATTTGTGAAAGTTGCATTGGGGAAAGAGAGAGCTGCGAGTTAATGCAGAAACTTAACTATAGCAATGAGAACATATCTCTGATTCTTGTAAGGGGAAAGGAAGTTCCTAGATCAATATTAGAGGCTTCAAAGGGTTCTGTTGAAACAGATCGACGTGTTTCCAAGCGCTTCCGGAAATCTAAAAGTGGTACATCGATAAGTCTTAAAGTTTCTGCTTCAACATCATTGTACCAGCTAAAAATGATGATATGGGAGGCCTTTGGGGTTGTAAAGGAAAACCAGATATTACAGAAAGGTGACAGGACAATTGATAATGAGGATGAATGTGCTACGCTAGCAGATGTAAACATATTTGCTGGAGATCAGATTATATTGAGAGACTCTGAGATCCATGAAGATAGAGATATTGCTGATGAGATTTGTGATGATAAAATGGAAATGCAGAGGAGTGAGGGAGGGTTTCATGGAACGCTTCTGACAGCAGACATTTCATCTCAGGTTGTTTGA 3222 0.4131 MSRPTTRSKNKRQRQVDDGASTSEIWRKIHETCVVTDDDTNQLYMIWKPICSSCRVNTKDNPNCFCALVPPPNGNRKSGLWQKISGIVDNLGPDPTKDLRASANSPAGLTNLGATCYANSILQCLYMNKCFREGIFSVEPDLLQQQPVLNQLVRLFVQLHISKRAFVDSFPFVKTLELDNGVQQDSHEFLTLLLSLLECCLSHSEVPKARTVVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGFKSLDESMNDYLAAEELCGDNQYFCASCKTRVDATRSIKLRTLPCVLNFQLKRCVFLPETTTRKKITSEFSFPAKLDMQPRLSEPSQSELIYDLSAVLIHKGTTVNSGHYVAHIKDENTGQWWEFDDEHVTKLGCHPFGERSSNSTAKSVRTDPIYSDASEVRIADSNGNGLDASHSQSSLVETFSSSDAYMLMYNLEHTKNVVKMGELSSDDAVPARYSFPLLTHLFDEIKNLNASYVDECAQYNQRKELELSRINERRQEVRSVLAEAPVQPLEQPFYWISSEWLRQWADNIRPSTLDNTSIQCSHGKVSVSKVTSIKRLSDKAWDKLFTKYGGGPTLSHGDCCWDCLIDGAHSVVSADTYRDRRESMKQLARDILDGNCPDGKYYVSRPWLQQWWKRKVLDAPSEADAGPTASISCPHGQLLPEQAHGAKRVLVPESLWHFLYEDALSVKPDDALGCPAFPSDSMPCSQCSDELSEVACLEDSLRLVKQVHRQNHEKLLLAKIIPLSLHCKYFLVPSSWISKWRSYMSPSVKNSDKPETLDGIINSLMCVKHSLLVEKPPELVFRRGTIVQRESSAGGLTMISENDWKCFCEEWGGTETKGISATIENSSHSENILTGFSSETQICEDQLNDKVNNDSGTRQLVIKTCPEICESCIGERESCELMQKLNYSNENISLILVRGKEVPRSILEASKGSVETDRRVSKRFRKSKSGTSISLKVSASTSLYQLKMMIWEAFGVVKENQILQKGDRTIDNEDECATLADVNIFAGDQIILRDSEIHEDRDIADEICDDKMEMQRSEGGFHGTLLTADISSQVV 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0562 1073 Gene3D Cysteine proteinases 93 449 - -
Lele25g0562 1073 ProSiteProfiles DUSP domain profile. 741 861 IPR006615 GO:0004843
Lele25g0562 1073 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 450 - -
Lele25g0562 1073 ProSiteProfiles Ubiquitin domain profile. 964 1030 IPR000626 GO:0005515
Lele25g0562 1073 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Lele25g0562 1073 SUPERFAMILY DUSP-like 508 594 IPR035927 -
Lele25g0562 1073 Gene3D - 960 1032 - -
Lele25g0562 1073 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 72 451 - -
Lele25g0562 1073 SMART dusp 524 595 IPR006615 GO:0004843
Lele25g0562 1073 ProSiteProfiles DUSP domain profile. 506 598 IPR006615 GO:0004843
Lele25g0562 1073 SUPERFAMILY Cysteine proteinases 105 450 IPR038765 -
Lele25g0562 1073 FunFam Ubiquitin carboxyl-terminal hydrolase 26 497 595 - -
Lele25g0562 1073 MobiDBLite consensus disorder prediction 1 21 - -
Lele25g0562 1073 CDD Ubl_USP48 963 1064 IPR044743 GO:0004197|GO:0004843|GO:0016579
Lele25g0562 1073 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Lele25g0562 1073 Gene3D - 497 595 IPR035927 -
Lele25g0562 1073 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Lele25g0562 1073 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Lele25g0562 1073 ProSiteProfiles DUSP domain profile. 613 720 IPR006615 GO:0004843
Lele25g0562 1073 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Lele25g0562 1073 SUPERFAMILY DUSP-like 634 699 IPR035927 -
Lele25g0562 1073 SUPERFAMILY Ubiquitin-like 966 1031 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0562 Lele-ChrLele25 3575230 3581567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0562 105 382 Miscellaneous Gene Families AT4G31670 30.000 7.64e-26 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0562 25 3575230 3581567 Lele27g1515 27 21103952 21110293 hybridization
Lele25g0562 25 3575230 3581567 Lele28g0565 28 3600458 3608422 hybridization