Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0561 ATGACAGTGTATTGGAGCGGGGCAAGTGGACGGGGATGGATTAGCATGGAAAGATCGATCCAAGCATCTCGGATCGACTTTCTTCCTCGAGGGTTCTTCATTCTTTCTCAGGAAATACAAGCAATGGCTGATGGCAAAGGAGTTGGAGAAGCTGAAAGCAAACAGACAAGTCCTACTGCCGCTGCGAGTAGAAAGAAGCGCCAGGGATTTATTTCCCGACTTTGGAATGGAATATTTAGATTACACGGAGATGATTTCGAAAAGAGACTGCAATACATTTCTAAAGAAGAAGTCGCTGTGTTGACTAGGATGAACAGGAGATCTCAATCTTGGAGGCAAACAACTCGGCATCTTATTGTGCTTTCGGTTATATTTGAGGTCATTGCTGTAGGTTATGCTATTATGACAACAAGATCAGTGGATATGAATTGGAAGATGAGGGCATTCCGGGTCTTGCCAATGTTTCTTTTGCCCGCCTTGTCATCTGCTGCTTATTCCGCAGTTGTCAGCTTTACAAGGATGTGTGATCGCAGGGACCAGAAAATTCTCGAAAGGCTTCGAGCTGAAAGGCAAGCGAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACACTACTCAACAGCTCATTCAGAGATATGATCCAGACCCGGCAGCAAAGGCAGCGGCAGCAACTGTTTTGGCATCTAAGTTGGGCGCAGATTCAGGCTTGAAAGTTTATCTAGGGGATGAATCAAACCACAGTGCTTCAACAGGGATGAGTAATGATGTTGAACTTGTACAAGCAAGTGGACTCCGAAATCGAAAACAAATGCAGTCTAGATATACTACTCCAGGGACAGCTACACCAAAGCTTCCTGTTCCTGATCAACAAATTGTTGGTGCTAGTGAAACTGAAGAAGTTCCGACTTCTGAGCATAACCAGCTTGTAGTTGTAGAGCACCACCAACCTCAGAGTTCATCCACAAATGATGGAGGATGGATTGCTCGAATTGCAGCATTGCTCGTTGGAGAGGATCCAACGCAGTCTTACGCACTTATATGTGGTAACTGCCACATGCATAACGGTCTTGCTCGGAAGGAGGATTTCCCTTTCATCACTTACTATTGCCCGCACTGTCAAGCCTTGAACAAGCCTAGGAATTCAGATGAGGGTGTCTCTACTTTGAATTCCCCAAAAATGCAGCTTCGAAAAGCAGACGTTGTTGATGCAGTTAAAAATACCTTGGATTCTACTGGTGACATCTTAATCACAAACAATAGTCCCGCTGATCCTCCTGCCGAGATTGAGGAAATATCTGAAAGGGCAGATTTGGGGGAGAAAGCTAGTTAA 1332 0.4459 MTVYWSGASGRGWISMERSIQASRIDFLPRGFFILSQEIQAMADGKGVGEAESKQTSPTAAASRKKRQGFISRLWNGIFRLHGDDFEKRLQYISKEEVAVLTRMNRRSQSWRQTTRHLIVLSVIFEVIAVGYAIMTTRSVDMNWKMRAFRVLPMFLLPALSSAAYSAVVSFTRMCDRRDQKILERLRAERQAKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYLGDESNHSASTGMSNDVELVQASGLRNRKQMQSRYTTPGTATPKLPVPDQQIVGASETEEVPTSEHNQLVVVEHHQPQSSSTNDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPFITYYCPHCQALNKPRNSDEGVSTLNSPKMQLRKADVVDAVKNTLDSTGDILITNNSPADPPAEIEEISERADLGEKAS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0561 443 MobiDBLite consensus disorder prediction 428 443 - -
Lele25g0561 443 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 327 377 IPR019273 -
Lele25g0561 443 Coils Coil 180 203 - -
Lele25g0561 443 MobiDBLite consensus disorder prediction 268 284 - -
Lele25g0561 443 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 64 412 IPR040115 GO:0071786
Lele25g0561 443 MobiDBLite consensus disorder prediction 268 288 - -
Lele25g0561 443 MobiDBLite consensus disorder prediction 416 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0561 Lele-ChrLele25 3568232 3573022 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0561 25 3568232 3573022 Lele01g0588 01 3458821 3461920 CCT
Lele25g0561 25 3568232 3573022 Lele02g0580 02 3473484 3476685 CCT
Lele25g0561 25 3568232 3573022 Lele03g0591 03 3485374 3489353 CCT
Lele25g0561 25 3568232 3573022 Lele04g0596 04 3617856 3621033 CCT
Lele25g0561 25 3568232 3573022 Lele27g1516 27 21112488 21116978 hybridization
Lele25g0561 25 3568232 3573022 Lele28g0564 28 3596664 3599818 hybridization