Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0555 ATGAAGGCCCCAAACCCTAACGGCGGGAAAAGGGAAGCATTTTTGGCGGGAAACGATATAATTCCATCCCCATACTCAAATCTTTCCCAGCTTGATGCCACTGCCGCCTTCTCAGGCGGTGGATTCATGGCCACAGAGTCTACCCAGATCAACGATTCATCTCCGTTGCCGGCCAAAAGTCGTGAGACTCAGGGTTTAGTTCCGGTAACAGTGAAGCAGATAAGCGAAGCCTCTCAATCCGGCGATGAAAAGTCGAATTTCGTAATCAGTGGCGTGGATGTTACCAATGTAACCTTGGTTGGTATGGTGTTTGAGAAAGTTGACAGAAACACTGATGTTAGTTTTGTTCTAGATGATGGAACAGGAAGGATCAAATGTCGAAGATGGGTGAATGAGCCTTTTGATACAAAGGAAATGGAAGAAATACGAGATGGTATGTACGTTCGTGTATATGGGCATTTGAAAAGCTTTCAAGGTGTGAAACAGGTCGTTGCTTTCTCAATCAGGCCAGTGATGAGTTTTGATGAGATTTCTTTTCACTTTATTGATTGCATACATAATCATCTTCACTCCAAAGTAAAGGTTGAAGGAGTTACTCCTGCACGTCCTCCATCTATAAACTCATCTCATGCAACAAATGGAAATCAAGCACCATCATCTAATCCATTATATGCTCAATATAGCATGGATGGGCTCAAGGACTGTGATAAATTGGTCCTTGAATATCTGAATCAGCATTCAGACATGTCTGATGAAAGGGGGATACATGTTAATGAGCTGTCTCGAGAGCTTAAACTTCCATTGGACAAGATCATATTGTCACTGAAGACTCTTGGCGACGATGGACTAGTATACTCCACCATTGATGACAATCATTACAAGCAAGCATGA 891 0.4276 MKAPNPNGGKREAFLAGNDIIPSPYSNLSQLDATAAFSGGGFMATESTQINDSSPLPAKSRETQGLVPVTVKQISEASQSGDEKSNFVISGVDVTNVTLVGMVFEKVDRNTDVSFVLDDGTGRIKCRRWVNEPFDTKEMEEIRDGMYVRVYGHLKSFQGVKQVVAFSIRPVMSFDEISFHFIDCIHNHLHSKVKVEGVTPARPPSINSSHATNGNQAPSSNPLYAQYSMDGLKDCDKLVLEYLNQHSDMSDERGIHVNELSRELKLPLDKIILSLKTLGDDGLVYSTIDDNHYKQA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0555 296 PIRSF RPA32 26 296 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele25g0555 296 MobiDBLite consensus disorder prediction 200 223 - -
Lele25g0555 296 FunFam replication protein A 32 kDa subunit A-like 59 193 - -
Lele25g0555 296 FunFam Replication protein A 32 kDa subunit 227 296 - -
Lele25g0555 296 PANTHER REPLICATION PROTEIN A-RELATED 30 294 IPR040260 -
Lele25g0555 296 SUPERFAMILY "Winged helix" DNA-binding domain 229 294 IPR036390 -
Lele25g0555 296 Gene3D - 58 192 IPR012340 -
Lele25g0555 296 Gene3D - 226 296 IPR036388 -
Lele25g0555 296 SUPERFAMILY Nucleic acid-binding proteins 66 190 IPR012340 -
Lele25g0555 296 Pfam Replication protein A C terminal 205 291 IPR014892 -
Lele25g0555 296 Pfam OB-fold nucleic acid binding domain 97 170 IPR004365 GO:0003676
Lele25g0555 296 CDD RPA2_DBD_D 96 189 - -
Lele25g0555 296 MobiDBLite consensus disorder prediction 202 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0555 Lele-ChrLele25 3531703 3534759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0555 29 294 Core DNA Replication Machinery Family AT2G24490 47.273 3.48e-87 260
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0555 25 3531703 3534759 Lele27g1523 27 21164029 21166913 hybridization
Lele25g0555 25 3531703 3534759 Lele28g0559 28 3562530 3565499 hybridization