LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g0549	ATGAATGACACGTGTTCATCAACTGTTCTATCATTTTTCATCTTTAAAATTGGGCTCTATCGAGGAAAGATCTTCCGTTGCCTCTCTCTCAAAAGTTCCAACCCATTCATTTCTTTCCCTGAAGCCTGCAGGATTCTGAACTCTCTTTTCTCTCTCCCTCTCCCTCTACAAACCAGAATCGCACAAAGATTTAGATTGAATAAGCAACAGATGGATGATTACTCTGGTAAACGAGCCATAGATGGGATGGTAGTACCTAAAAAGGGGATGGCTCATGTATTTAGAGATACTAATGCTAGGGACCGTAATGGCCAGTTCTGCAGCCGACCTGGGTGCAGCAGTAGAGTGAATTCTCCTAAGGGTGCTCAATTTGGTTCATCTGAAAAGGGTAAATCTTCGAGGCCTCCAATCCGATCTTCAAGTCGTAAGGAAGCAATCGGACGTTCCTCTAGAACTTTACCAGGATTTTATAACCCAGGAAAATCCCCTATGGAGCCCCGGAAAACATTATCTTGTCAGTCAGAGACTGTTCCATGTGAGACGCCTAGTTTACAGGATGAAAAAGAGATTTCTGAGCTCGTCCCACCACCTGAAAAATTTCAAGGAGGGCCTCAAGCTGAAGTGGGAAGTTCAGAGTCTGCTAATATCATATCAATGGAAGTAGGAAGCTCTAGTGTAGCATCATCGAACACAAAATATAGGAGGAATCTTCGTCAAAAGCCTGGATTCAATGGTCAAGAATTTAAAAGCTCTGGCTCAGTGACACGCACTGGAGGTAGCAGGTATGGATTGAGGAACCTCAGATGCAATTCTATATCTGATGTCATCCCTTCAGGTTGTTCATCATCAGATTCAACCCCGAATAGAAAGAAAGATGTGATGAAAACGAGAAACTGTGAAGGAGAAAGTAGTTCTACTGCCAGAGGTAAGAAAATGAGTGGATCTTCAATGGACGGACAAAATTCCGGCCCCAGAAATGGAATATCTATATCAGATTCAAGAAGAACCAGAAACTTTCCTACTCACAGGGATAACAACAACATTGGATCGGTTAGAACTAGAAGATCTTTCAATGGTCATGCCAGGGGAAGGCTTCCTAGCCAAGCAAATGAAAACCCTGCTGCACCACCCCATGAGTCCCCTATTACTATATCGTCTTTGCCTCATTCCAGTGACCTTAGTGCTCATGATTTATTACGTCATTCCTCGTTGGAGACTCCCCTCAGAAGTCCTAGATCTTACAGTAGACCAGGTAGTAGCAGTGAGCGGTTATTTGGCCTTTTGCCCCCATCTCCTTCAGAATATGGGATCACTCGATCTCTCCTGAACCGAGACAGCTTTAGACGCTACAACATGGATGATATTGCAGAGGTATTATTGTCTCTGGAGAGGATTGAACAAGATGAAGATCTTACACGCGAGCAAATTCTTTTACTGGAGACCAACTTGTTCCTTAATGGACTAAATTTCTATGATCAACATAGAGACATGCGTTTGGATATTGATAACATGTCATACGAGGAACTATTGGCTTTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCACTCTCAGAATGCCTAAAGAGAAGCTTCTATCAACCTGCCACTTCAGATGATGCCGCCGAGAGCTGCAATGAGAATAAGGATGGCATAAAATGCAGCATCTGCCAGGAGGAATATGTGGAAGCAGAGGAAGTGGGGAGTCTGCAATGCGAGCACAGATATCATGTGGGGTGCATACAGCAATGGCTGCGCCTCAAGAACTGGTGTCCTATTTGCAAAGCCTCTGCGGCACCATCGCATTCGTCTTCTTGA	1830	0.4426	MNDTCSSTVLSFFIFKIGLYRGKIFRCLSLKSSNPFISFPEACRILNSLFSLPLPLQTRIAQRFRLNKQQMDDYSGKRAIDGMVVPKKGMAHVFRDTNARDRNGQFCSRPGCSSRVNSPKGAQFGSSEKGKSSRPPIRSSSRKEAIGRSSRTLPGFYNPGKSPMEPRKTLSCQSETVPCETPSLQDEKEISELVPPPEKFQGGPQAEVGSSESANIISMEVGSSSVASSNTKYRRNLRQKPGFNGQEFKSSGSVTRTGGSRYGLRNLRCNSISDVIPSGCSSSDSTPNRKKDVMKTRNCEGESSSTARGKKMSGSSMDGQNSGPRNGISISDSRRTRNFPTHRDNNNIGSVRTRRSFNGHARGRLPSQANENPAAPPHESPITISSLPHSSDLSAHDLLRHSSLETPLRSPRSYSRPGSSSERLFGLLPPSPSEYGITRSLLNRDSFRRYNMDDIAEVLLSLERIEQDEDLTREQILLLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSECLKRSFYQPATSDDAAESCNENKDGIKCSICQEEYVEAEEVGSLQCEHRYHVGCIQQWLRLKNWCPICKASAAPSHSSS	609

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g0549	609	FunFam	E3 ubiquitin-protein ligase arkadia	520	604	-	-
	Lele25g0549	609	MobiDBLite	consensus disorder prediction	406	420	-	-
	Lele25g0549	609	SUPERFAMILY	RING/U-box	557	603	-	-
	Lele25g0549	609	MobiDBLite	consensus disorder prediction	299	335	-	-
	Lele25g0549	609	Pfam	Ring finger domain	557	599	IPR001841	-
	Lele25g0549	609	SMART	ring_2	558	598	IPR001841	-
	Lele25g0549	609	MobiDBLite	consensus disorder prediction	105	134	-	-
	Lele25g0549	609	ProSiteProfiles	Zinc finger RING-type profile.	558	599	IPR001841	-
	Lele25g0549	609	MobiDBLite	consensus disorder prediction	167	181	-	-
	Lele25g0549	609	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	185	603	IPR045191	GO:0061630
	Lele25g0549	609	MobiDBLite	consensus disorder prediction	240	390	-	-
	Lele25g0549	609	MobiDBLite	consensus disorder prediction	402	427	-	-
	Lele25g0549	609	MobiDBLite	consensus disorder prediction	240	287	-	-
	Lele25g0549	609	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	518	604	IPR013083	-
	Lele25g0549	609	MobiDBLite	consensus disorder prediction	105	187	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g0549	Lele-ChrLele25	3486098	3490839	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g0549	437	602	C3H Transcription Factor Family	AT2G15530	40.964	8.01e-36	141

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele01g0588	01	3458821	3461920	Lele25g0549	25	3486098	3490839	CCT
	Lele02g0580	02	3473484	3476685	Lele25g0549	25	3486098	3490839	CCT
	Lele03g0591	03	3485374	3489353	Lele25g0549	25	3486098	3490839	CCT
	Lele04g0596	04	3617856	3621033	Lele25g0549	25	3486098	3490839	CCT
	Lele25g0549	25	3486098	3490839	Lele27g1528	27	21206669	21209995	hybridization
	Lele25g0549	25	3486098	3490839	Lele28g0555	28	3525372	3528405	hybridization