Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0541 ATGGCGGTGGAGCTCATGGGGTTTCCGAAAATGGACGAGCAGAAAGCAATTCAGGATGCTGCATCGGAGGGATTAAAGGGCATGGAGAATCTAATCCGTCTTCTCTCCCACAAACCCAATCTCGTTGATTGCTCTAATCTCACCGATGTTACTGTTTCTAAGTTTAAGAAGGTCATTTCTCTTCTAAATCGCACTGGCCATGCCCGGTTCAGAAAAGCGCCAATTCCCTCCTCTTCTAGCACGTCTCCTCCTTCTACATCAAAGTTGCCGCCACCATCATCCGCTGCGGCCTCGTCTGCGAACATTTCGCAATCACAAATTTCAAATCTATCACCTGCACAGTTCACCTCCCCGGCGCCGATCGTAAATCCGGTAACCGTTCATCACGCTCCGATCAACAACAACACTGCTCCATCCGGTTTTGTTGCGGCTCATTCACAGTCTCTGACTCTCGATTTCACAAAACCTAATTTATTGAGCTCCAACACGAAGCCCCTAGAGCTGGAGTTCTCGAAGGAAACCTTCAGCGTGTCTTCAAACTCATCTTTCATGTCGTCAGCCATCACCGGCGACGGTAGCGTATCGAATGGCAAACAGGGATCGTCGATCTTCCTTACATCGGCAGCACCAACGGTCTCCGGCAACGGGAAGCCACCCCTGTCGACGGTACCGACGAAAAAGCGATGCCACGACCACCATGAGCACTCCGATGACCTCTCCGGCTCCAGCAAGTGCCACTGCACAAAAAGAAGGAAGAATCGGATGAAGAAGGTGGTAAGAGTGCCAGCGATTAGTTCAAAGGTCGCGGATATTCCGCCGGACGAGTTCTCGTGGAGGAAGTACGGTCAGAAGCCGATAAAGGGATCACCGTATCCAAGGGGTTACTACAAGTGCAGTACGGTGAGAGGGTGTCCGGCGAGGAAACACGTTGAGCGGGCCCCAGATGATCCGGCGATGCTGATCGTAACCTATGAGGGGGAGCATCGCCACGCGTTGCAGGCCGCAATGCAGGATAACGGAGTCGGGGGTGTTGGGTTGGTATTTCAGTCAACGTGA 1056 0.5246 MAVELMGFPKMDEQKAIQDAASEGLKGMENLIRLLSHKPNLVDCSNLTDVTVSKFKKVISLLNRTGHARFRKAPIPSSSSTSPPSTSKLPPPSSAAASSANISQSQISNLSPAQFTSPAPIVNPVTVHHAPINNNTAPSGFVAAHSQSLTLDFTKPNLLSSNTKPLELEFSKETFSVSSNSSFMSSAITGDGSVSNGKQGSSIFLTSAAPTVSGNGKPPLSTVPTKKRCHDHHEHSDDLSGSSKCHCTKRRKNRMKKVVRVPAISSKVADIPPDEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHRHALQAAMQDNGVGGVGLVFQST 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0541 351 Gene3D WRKY domain 251 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele25g0541 351 Pfam WRKY DNA -binding domain 274 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele25g0541 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 335 IPR044810 GO:0003700
Lele25g0541 351 SUPERFAMILY WRKY DNA-binding domain 270 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele25g0541 351 ProSiteProfiles WRKY domain profile. 267 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele25g0541 351 MobiDBLite consensus disorder prediction 208 245 - -
Lele25g0541 351 MobiDBLite consensus disorder prediction 224 245 - -
Lele25g0541 351 Pfam Plant zinc cluster domain 226 270 IPR018872 -
Lele25g0541 351 MobiDBLite consensus disorder prediction 70 103 - -
Lele25g0541 351 SMART WRKY_cls 272 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele25g0541 351 FunFam WRKY transcription factor 65 256 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0541 Lele-ChrLele25 3447364 3448875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0541 1 350 WRKY Transcription Factor Family AT2G24570 57.618 1.84e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele25g0541 WRKY 2e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0541 25 3447364 3448875 Lele27g1535 27 21247003 21248617 hybridization
Lele25g0541 25 3447364 3448875 Lele28g0548 28 3491018 3492519 hybridization