Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0536 ATGCAACAGAGGCTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGCGTTGCTTCAGCAACAGCAGATGTATCACCCAGGGATGCTAGCCGCTACTATGTCCCAGATTGAGCCTATTCCAAGTGGAAATTTGCCTCCAGGATTTGACACTTCTACATGCCGCAGTGTTTATGCAGGAAATATTCATGTAAATGTTACTGAAAAACTTCTTGCTGAAGTCTTTCAAAGTGCTGGTCCTCTCGCTGGGTGCAAGCTCATAAGGAAAGAGAAGTCCTCATATGGTTTTGTGGATTACCATGATAGAGCATCTGCAGCCGTTGCAATAATGACATTGCATGGACGCCAACTATATGGTCAGGCACTTAAGGTGAATTGGGCATATGCCAATACCCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTTATGTGGGATCTCAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCAGCAGGATGCTCAAAATGCCATCAATGATATGAATGGTAAATGGCTGGGAAATAGGCAAATACGATGCAACTGGGGAACCAAGGGCTCTGGTATGAGTGCCAATGAGGAGAAGAACAATGACACTCAAAATGCTGTTGTGCTTACAAATGGGTCTTCAGATGGAGGTCAGGAATATAGTAATGAGGATGCTCCTGAAAACAGTCCCGCCTATACCACCGTTTACGTTGGCAATCTTCCCCATGATGTAACGCAAAATGAACTCCACTATCAGTTCCACGCATTGGGGGCTGGAGTAATTGAGGAAGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTAAGATACAACACTCATGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGTAGAATACTTCGTGGGAAAACAATGAAGTGTTCATGGGGTAACAAGCCAACACCTCCTGGAACAGCTTCAAACCCACTGCCTCCTCCTACACAACCTTATCAAATGCTTGCCACAACAGGGATGAACCAAGGCTATTCTCCTACTGAGTTATTGGCTTATCAGCGCCAACTGGCCTTAAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCTCTTGTGCATATGACTGGTCAACATGGCCTTGCTGCTTCCTCCATTGGCTTAAGCTCTGGGGCATCCCAAGCCATGTATGATGCATATTCTGGTAATTCTTCAAGGCAGCACCTCATGTACTATCGTTAA 1305 0.4506 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAATMSQIEPIPSGNLPPGFDTSTCRSVYAGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAAVAIMTLHGRQLYGQALKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMNGKWLGNRQIRCNWGTKGSGMSANEEKNNDTQNAVVLTNGSSDGGQEYSNEDAPENSPAYTTVYVGNLPHDVTQNELHYQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAELAIQMANGRILRGKTMKCSWGNKPTPPGTASNPLPPPTQPYQMLATTGMNQGYSPTELLAYQRQLALSQAAVSGLSGQALVHMTGQHGLAASSIGLSSGASQAMYDAYSGNSSRQHLMYYR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0536 434 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Lele25g0536 434 SMART rrm1_1 141 214 IPR000504 GO:0003723
Lele25g0536 434 SMART rrm1_1 263 332 IPR000504 GO:0003723
Lele25g0536 434 SMART rrm1_1 56 125 IPR000504 GO:0003723
Lele25g0536 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Lele25g0536 434 SUPERFAMILY RNA-binding domain, RBD 134 228 IPR035979 GO:0003676
Lele25g0536 434 CDD RRM3_TIA1_like 262 336 - -
Lele25g0536 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Lele25g0536 434 SMART rrm2_1 141 214 IPR003954 GO:0003676
Lele25g0536 434 SMART rrm2_1 263 332 IPR003954 GO:0003676
Lele25g0536 434 CDD RRM2_PUB1 141 215 - -
Lele25g0536 434 Gene3D - 1 138 IPR012677 -
Lele25g0536 434 Gene3D - 139 239 IPR012677 -
Lele25g0536 434 Gene3D - 240 340 IPR012677 -
Lele25g0536 434 FunFam Nucleolysin TIAR-like protein 1 138 - -
Lele25g0536 434 SUPERFAMILY RNA-binding domain, RBD 251 345 IPR035979 GO:0003676
Lele25g0536 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Lele25g0536 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Lele25g0536 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Lele25g0536 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 339 - -
Lele25g0536 434 MobiDBLite consensus disorder prediction 220 257 - -
Lele25g0536 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Lele25g0536 434 FunFam Oligouridylate-binding protein 1C 239 340 - -
Lele25g0536 434 FunFam Nucleolysin TIAR-like protein 139 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0536 Lele-ChrLele25 3386030 3391808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0536 56 336 Eukaryotic Initiation Factors Gene Family AT1G22760 25.000 4.72e-18 84.7