Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0478 ATGGAAGCACCCGACTATTTCCACGGCGGCTTTTGCTCCCAATTCGCGTCCTCCGATGCCAAGACCGACCATTTCATCGTGGAGGACCTCCTCGACTACTCCCACGACGACAACGCTATCATCACTGACCCCACCTTCGACTCTCTTCCCGCCGGTTCTTCCATTCTAATTAACCCCGTTCATAGCTCCAATTCCTCTTCTTTCTCCGGCTGCGACCCCAATTTCCACCCTCACATTACCTCTCGAAATTTACCCGACCCATATTTCTCGAGCGACCTCTGCGTCCCGAGCGATGATATGGCGGAGCTGGAATGGCTCTCGAACATTGGGGAGGAATCATTTTCGACCGAGGACCTGCAGAAACTGGAGCTGATCTCGGGCATAAAGGCCGGAAACGAGGAAGCATCAGAAAGCCGTGTGTTGCAGCACCACGAAGAAACCAACAGGAGCAACGTCATATTCAACCGCCAAGTCTGGGTTCCGGCGAAGGCTCGCAGCAAGAGATCCCGCGGGCCCCCATGCAACTGGACCTCTCGGCTCCTCGTTCTCTCTCCCACATCATCCTCTTCCGAACCGGATGTCGTCCTTTCCACCCAGCCCGCGAAGAAGCCGGGGAAATCGGCGACCAGGAAAAAGGAGAACGGCGAGGAAGGGTCCGGGGAGGGGCGGAAATGCCAGCATTGCGCGACGGATAAGACGCCGCAGTGGAGGACGGGACCGATGGGCCCGAAGACGCTGTGCAATGCTTGTGGGGTGAGGTACAAGTCGGGGAGGCTGGTGCCGGAGTACAGGCCGGCGGCGAGTCCGACGTTCGTGCTGACGAAGCACTCGAATTCGCACCGGAAGGTGCTGGAGCTCCGAAGACAGAAGGAGATGATGAGGGCCCAGCATCAGCGGCAGCTGTATCTGCAACATCAAAACATGATGTTCGATGTGCCCAACGGCGACGATTACTTGATCCACCAACACGTGGGCCCAGATTTCAGGCAGGTCCTCTAG 999 0.5756 MEAPDYFHGGFCSQFASSDAKTDHFIVEDLLDYSHDDNAIITDPTFDSLPAGSSILINPVHSSNSSSFSGCDPNFHPHITSRNLPDPYFSSDLCVPSDDMAELEWLSNIGEESFSTEDLQKLELISGIKAGNEEASESRVLQHHEETNRSNVIFNRQVWVPAKARSKRSRGPPCNWTSRLLVLSPTSSSSEPDVVLSTQPAKKPGKSATRKKENGEEGSGEGRKCQHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQHQRQLYLQHQNMMFDVPNGDDYLIHQHVGPDFRQVL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0478 332 SMART GATA_3 219 269 IPR000679 GO:0006355|GO:0043565
Lele25g0478 332 FunFam GATA transcription factor 214 300 - -
Lele25g0478 332 MobiDBLite consensus disorder prediction 185 227 - -
Lele25g0478 332 PIRSF Txn_fac_GATA_plant 11 314 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele25g0478 332 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
Lele25g0478 332 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
Lele25g0478 332 Gene3D - 220 306 IPR013088 GO:0006355|GO:0008270
Lele25g0478 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 283 - -
Lele25g0478 332 MobiDBLite consensus disorder prediction 206 227 - -
Lele25g0478 332 PANTHER GATA TRANSCRIPTION FACTOR 17 297 - -
Lele25g0478 332 CDD ZnF_GATA 224 271 IPR000679 GO:0006355|GO:0043565
Lele25g0478 332 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0478 Lele-ChrLele25 3030100 3031404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0478 2 332 C2C2-Gata Transcription Factor Family AT5G25830 48.485 2.98e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele25g0478 GATA 3.8e-16 CL0167