Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0474 ATGGATGATTACGATAGTGGTGGTCCTAGTCCCGATAAGGCTCCGGCTGCCAAAGACGAGGGCTGCACGGCCCCGTTACCTGAGAAGGTCCAGGTTGGTGGTTCACCGGTATACAGGATTGATAGAAAATTGGGAAAAGGAGGATTTGGACAAGTTTATGTTGGCAGGCGTGTTGGTGCAACAAATTCCATTGAACTGACCGGTCCTGGAGCTGTAGAGGTGGCCTTAAAGTTTGAGCATAGAAGCAGTAAAGGCTGCAACTATAGACCACCATATGAGTGGCAGGTTTACAATGTGTTGGGTGGTAGTCACGGTGTTCCACGAGTACATTATAAGGGGAGGCAAGGTGATTATTATATTATGGTAATGGATATGCTGGGCCCTAGTCTATGGGATGTATGGAATAACAACTCTCATGCGATGTCTATAGAAATGGTAGCTTGTATTGCCATTGAGGCAATATCCATATTAGAGAAGATGCATTCTAGAGGCTATGTTCATGGTGATGTAAAACCCGAGAACTTTTTGCTTGGCCCCCCTGGAACTCCTGATGAGAAGAAGCTGTTTCTTGTTGATCTGGGATTAGCTACCAGATGGCGTGATAATTCAACTGGCCTTCATGTTGAGTATGATCAACGCCCAGATGTATTTAGGGGGACAGTACGATATGCTAGTGTGCATGCTCATCTTGGTAGAACTGGCAGCAGAAGAGATGACTTGGAATCACTTGCTTATACATTGATCTTCCTTCTTCGTGGTCGGCTTCCGTGGCAAGGATATCAGGGAGAAAACAAAGGATTCCTTGTCTGCAAGAAGAAGATGGCCACATCTCCAGAAACTTTGTGCTGTTTTTGTCCTCAACCCTTTCGACAGTTTGTCGAGTATGTTGTGAATCTGAAGTTTGATGAAGAACCAAATTATGCGAAGTATATATCCCTTTTTGATGGAATTGTTGGTCCGAATCCAGACATCAGGCCAATCAATACTGAGGGGGCTCAGAAACTTATATTTCAGGTTGGTCATAAGAGAGGACGGTTGTCCATAGAAGATGATGATGACGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCAGCAACTCAATGGATCAGCGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTACAATGTGGCGGATATGCGTCTGTCCCAACACATTGAGAAAGGAAACGAGGATGGGTTATTTATAAGCAGTGTGGCTTCTTGTTCCAATCTTTGGGCACTTATCATGGATGCTGGCACTGGTTTCTCTTCACAAGTTTATGAGCTCTCACCCTATTTTCTTCATAAGGAATGGATTATGGAACAATGGGAAAAAAATTATTACATCAGTGCTATAGCAGGGGCTAATAATGGAAGCTCATTGGTTGTGATGTCTAAAGGGACCCAGTACTTGCAGCAGTCCTATAAAGTCAGCGATGCATTCCCATTCAAGTGGATTAATAAAAAATGGAGAGAGGGCTTTTACGTCACTTCCATGGCAACTGCTGGAAGTAGATGGGCAATTGTCATGTCCCGTGGTGCAGGATTTTCAGATCAGGTTGTGGAACTTGATTTCCTTTATCCTGGTGAAGGTATTCACCGGAGATGGGATAATGGTTACCGCATCACATCTACTGCTGCGACGTGGGACCAAGCTGCTTTTGTTCTTAGCATCCCGAGAAGAAAACCAGCTGATGAAACTCAAGAGACGCTTCGTACATCTGCATTCCCTAGTACTCATGTTAAGGAAAAATGGGCCAGGAATTTGTATATAGCATCTATTTGTTATGGGAGAACCGTTTCATGA 1818 0.4411 MDDYDSGGPSPDKAPAAKDEGCTAPLPEKVQVGGSPVYRIDRKLGKGGFGQVYVGRRVGATNSIELTGPGAVEVALKFEHRSSKGCNYRPPYEWQVYNVLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHAMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIFQVGHKRGRLSIEDDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFSSQVYELSPYFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDAFPFKWINKKWREGFYVTSMATAGSRWAIVMSRGAGFSDQVVELDFLYPGEGIHRRWDNGYRITSTAATWDQAAFVLSIPRRKPADETQETLRTSAFPSTHVKEKWARNLYIASICYGRTVS 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0474 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lele25g0474 605 MobiDBLite consensus disorder prediction 1 28 - -
Lele25g0474 605 CDD STKc_CK1 38 314 - -
Lele25g0474 605 FunFam casein kinase 1-like protein HD16 11 361 - -
Lele25g0474 605 Gene3D Transferase(Phosphotransferase) domain 1 10 357 - -
Lele25g0474 605 ProSitePatterns Protein kinases ATP-binding region signature. 44 77 IPR017441 GO:0005524
Lele25g0474 605 SUPERFAMILY Protein kinase-like (PK-like) 38 318 IPR011009 -
Lele25g0474 605 ProSiteProfiles Protein kinase domain profile. 38 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0474 605 PANTHER CASEIN KINASE-RELATED 38 570 - -
Lele25g0474 605 SMART serkin_6 38 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0474 605 Pfam Protein kinase domain 38 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0474 Lele-ChrLele25 2988954 2992650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0474 43 314 MAP Kinase Kinase Kinase AT5G50180 22.615 1.21e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lele25g0474 Pkinase 8.9e-16 CL0016