LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g0442	ATGGGAACTGGATGGAGAAGAGCCTTTTGCACTCGTGACCCTGAATCTCCCATATCCGATAAGCAGCACAGATGCTCGAGTCCAAGCCCCAGCCCCAGAAGCTGTGTTCGGTTGGGTTTTCTCTCCGGCGGAAGCAACTCTTCCACTCCACGCTTGCAGCCGCAATCTCAAGCTGTGTCTAGTCCGAGCTTGCGTTGCCGAACAGTTTCAGAAGCAGCAAACGTGAATGAGAGCCCCAGGTTTCAAAGCAAAAATACTCCCAGGGCAACCAAGTCCCCCAAGACCAGTTCAACCTCAAATCCCACATCTCCGCGTTCTCCTTTGAAGTTATCTCTCTTCAGGAATAGCTTCAAATTCCGGAGTAGTTGTGGAATCTGTTTGAATAGCGTGAAAACTGGTCAGGGAACGGCCATTTACACTGCAGAATGTACTCACGCCTTTCACTTTCCCTGTATCGCCGATTATGTACGCAAACATGGAAGTCTCGTCTGCCCCGTCTGCAACGCTACCTGGAAAGACGTGCCTCTACTAGCCGCACACAAGAACCACGCCACAGAATCCGCCGAAAAAAACGATATCGTGGTTGATAAGAGCGTCGTAAAACCAAATGCCACCCAGAAGACTAAAGAAAGCTCATCCCCAGTTTTCAGAACCAAGCTTGTTGAACCGCCGCCCCAACAATTGCCACAAAAACTGCCAAAGCAATCTGATTCGTACAGGTCCTACGACGATGATGAGCCACTTCTATCTCCCACATCCGGTGGTAGTCAAATCATTCCAATACCTGAAGCCGACGAAAACGCCGAAGAAGAAGACGACATTGAAGAATTCCAGGGATTTTTCGCCAACGCAAAATCTTCATCCTTGATCAAATCTAACTCTGATGACTTGCAAGTAAGCGAAATAGATTCCAGGACCGTTCAGGTGAAGTTGATCCCCGAGTGTGCTGTAGTGTCAGTCTCTCGAACCCACGAGACTTACGCTTTGGTTCTGAAAGTGAAGGCTCCTCCGCCGCCATCTCCACCGCGTAGTGGCAATAACAGTTCGGCGCAGCGTCTTGGTCAGTCGCAGCGAGCACCCATAGATCTCGTAACGGTTCTTGACGTTGGTGGAAGCATGACAGGCGCGAAGCTTCACATGCTTAAGCGCGCGATGCGTTTGGTTATTTCGTCACTCAGCCCAGCCGACAGGCTCTCCATAGTGGCTTTCTCGGCCACTTCAAAGCGGCTCTTACCCTTGAGAAGAATGACGGCTCAAGGACAGCGCGTGGCTCAGCGCATCATCGACCGGCTCGTATCTGGCCACGGCACTTGTGTGGGCGATGCTCTCAGAAAAGCCACCAAAGTGCTCGAGGATCGGAGGGAGAGAAACCCGGTAGCTAGCTTGATGCTCCTATCGGACGGTCAGGATGAACGAGTCCAAGGCAGTAACGTCAACAACCAACGAAAACCTTCGAACCAAGTGTCCTCGACCCGATTCGCCCACATTGAGATTCCGGTTCATGCGTTCGGGTTGGGGAAAAAGAGCGGCTTCAGCCACGAGCCGGCCGAGGATGCATTTGCCAAGTGCGTTGGAGGTTTATTGAGTGTGGTTGTACAGGACTTGAGAATTCAGCTAGGCTTCAAGTCGGAATCATCGGCGGCTGAAATCGGTGGCATCTATTTGTGCGGTTGTCGAACCACGGCACTGAGCTCAGGCTGCGTACGGCTCGGTGACTTGTACGCCGAGGAAGAGAGGGAGTTACTGGTGGAGCTGAGAGTTCCAAGGTCGGCTCTGAGGGCCCACCACGTGATGACAGTGCGGTGCCTGTATAAGGATCCTGCTTCTCAAGAGATCGTATCCAGTAGGGAACAGGCACTACTGGTTCCGCCACCTCAGGGAACGCGAAGCGAACGCTTGAGGAATTTCTTCATTGCGACTCGAGCCATAGCCGAGTCTCGCCGGCTCGTTGACCACAACGACTTCACGAGCGCTCATCATTTACTGGCATCGGCTCGCGCGCTCTTGATGCAGGCAAAGTCGAGCTCGGCTGAGGAGCACGTGCGCGAGTTGGAAGCTGAGCTGGCAGAACTTCATTGGCGCACTCAGAACCCGATGGAGCAGCAGATGATGATGCAGGAACGCAGGAGGGGGTACGAGAGGGAGTCGATGAGCTTGGTCGATGATAATGGGGAGCCGCTTACGCCGACGTCGGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGGTGGCCATCATGAAGAAGTCATTGAACAGAGTCAGGGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA	2292	0.531	MGTGWRRAFCTRDPESPISDKQHRCSSPSPSPRSCVRLGFLSGGSNSSTPRLQPQSQAVSSPSLRCRTVSEAANVNESPRFQSKNTPRATKSPKTSSTSNPTSPRSPLKLSLFRNSFKFRSSCGICLNSVKTGQGTAIYTAECTHAFHFPCIADYVRKHGSLVCPVCNATWKDVPLLAAHKNHATESAEKNDIVVDKSVVKPNATQKTKESSSPVFRTKLVEPPPQQLPQKLPKQSDSYRSYDDDEPLLSPTSGGSQIIPIPEADENAEEEDDIEEFQGFFANAKSSSLIKSNSDDLQVSEIDSRTVQVKLIPECAVVSVSRTHETYALVLKVKAPPPPSPPRSGNNSSAQRLGQSQRAPIDLVTVLDVGGSMTGAKLHMLKRAMRLVISSLSPADRLSIVAFSATSKRLLPLRRMTAQGQRVAQRIIDRLVSGHGTCVGDALRKATKVLEDRRERNPVASLMLLSDGQDERVQGSNVNNQRKPSNQVSSTRFAHIEIPVHAFGLGKKSGFSHEPAEDAFAKCVGGLLSVVVQDLRIQLGFKSESSAAEIGGIYLCGCRTTALSSGCVRLGDLYAEEERELLVELRVPRSALRAHHVMTVRCLYKDPASQEIVSSREQALLVPPPQGTRSERLRNFFIATRAIAESRRLVDHNDFTSAHHLLASARALLMQAKSSSAEEHVRELEAELAELHWRTQNPMEQQMMMQERRRGYERESMSLVDDNGEPLTPTSAWRAAEKLAKVAIMKKSLNRVRDLHGFENARF	763

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g0442	763	MobiDBLite	consensus disorder prediction	40	108	-	-
	Lele25g0442	763	Coils	Coil	674	694	-	-
	Lele25g0442	763	SUPERFAMILY	vWA-like	360	535	IPR036465	-
	Lele25g0442	763	CDD	RING-H2	123	168	-	-
	Lele25g0442	763	MobiDBLite	consensus disorder prediction	201	215	-	-
	Lele25g0442	763	Pfam	von Willebrand factor type A domain	363	469	IPR002035	-
	Lele25g0442	763	PANTHER	CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR	122	758	-	-
	Lele25g0442	763	SMART	VWA_4	360	547	IPR002035	-
	Lele25g0442	763	Gene3D	von Willebrand factor, type A domain	362	531	IPR036465	-
	Lele25g0442	763	MobiDBLite	consensus disorder prediction	333	355	-	-
	Lele25g0442	763	Pfam	RING-like zinc finger	123	152	IPR001841	-
	Lele25g0442	763	SMART	ring_2	123	167	IPR001841	-
	Lele25g0442	763	MobiDBLite	consensus disorder prediction	1	108	-	-
	Lele25g0442	763	ProSiteProfiles	Zinc finger RING-type profile.	123	168	IPR001841	-
	Lele25g0442	763	CDD	vWA_C3HC4_type	361	532	-	-
	Lele25g0442	763	SUPERFAMILY	RING/U-box	117	173	-	-
	Lele25g0442	763	MobiDBLite	consensus disorder prediction	199	260	-	-
	Lele25g0442	763	ProSiteProfiles	VWFA domain profile.	362	506	IPR002035	-
	Lele25g0442	763	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	121	178	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g0442	Lele-ChrLele25	2774738	2777138	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g0442	123	173	C3H Transcription Factor Family	AT1G74410	41.176	3.50e-06	47.0

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele25g0442	25	2774738	2777138	Lele27g1642	27	21936214	21938617	hybridization
	Lele25g0442	25	2774738	2777138	Lele28g0448	28	2854796	2858114	hybridization