Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0439 ATGGAGGTGTTTGAACATGATTTCTTGGAGGAATTGCTAGCTCTGAAAAAACAAGCATGGGACACAATCCCAAGTCCAAACGAAGAAAACCAGTTCTTGTTCCCTAATAATGCTTATAATAGTTTGGACTACTTTGATCCAAACACTCTTGCTTTTCTGCCAAATTCCTTCCCTGATCAACAGGTACCTCAAAGCTACAATAACAACTATTACAGTAGCTTCAACGAAATCTACAGCTCATTACTTGATGAGTTTTCTACGCCACAGATCATCGATTCTACTTCATCTCCCTACACCACTCTTGATACTACAACTTCTTCTCTTAGCACTACCCCTCCTTTTCTGGTTCAAAACGACAATAACCCCTTGTCGTCGTCCACCATGACGATGGAAGACGAGCCTCAGAGTTTGGAGCTCAAAACGACATGTAAGACAGAGTCCATCAGCCATTCTCCGGAAATAATGCCAATTTTCAACATGAGCACTTGTAATTTGGAAAGAAAGAATCGACCAAAGAAACCGCTGGGACTGCCCTCCAAGAATCTAATGGCTGAGAGGAGGAGAAGAAAGAGGCTAAATGATCGTCTCTCCATGCTAAGATCTATTGTCCCCAAGATTAGTAAGATGGATAGAACATCTATACTTGGAGACACAATAGACTACATGAAAGAACTTCTGGAGAAGATTAAAGATTTGCAGCGAGAAGTGGACTTGGATTCAAACGTGTTGGGCGTTTTGAAGGATGAGAAACCAAATGAAATCATAGTGAGAAATTCACCCAAGTTTGAAGTGGAGAGAAGGCATGTGGACACGAGGGTTGAAATATGCTGCGCAGGGAAGCCAGGCTTGTTGCTATCTACGGTGAATATCTTGGAAGCCTTTGGGCTTGAGATTCAGCAATGTGTTATCAGCTGCTTCAATGATTTTAAGATGCAGGCTTCTTGCTCAGAGGAATTGGAGCACAGGACGATACTGGGTTCGGGGGATATAAAGCAAGAGTTATTTAGAAGCGCAGGATATGGAGGAAGATGTTTCACCGAGAGATTTAATTCGCAGAGAAAAGAATGTGCATACGAAGGGGCGGTCAACGATGTTCCCCACACACATACTGTAACAAGACAAAAACGCCAAGAACTCTTGTGGATGGATCATTGTGATCAAGGCAGTGAGATTAATGTAGGAAGTGGAATCATTTTCTCTGAAGAAGAAGATTGTCGTGTGGTGGATGAAGCAATATGA 1239 0.4237 MEVFEHDFLEELLALKKQAWDTIPSPNEENQFLFPNNAYNSLDYFDPNTLAFLPNSFPDQQVPQSYNNNYYSSFNEIYSSLLDEFSTPQIIDSTSSPYTTLDTTTSSLSTTPPFLVQNDNNPLSSSTMTMEDEPQSLELKTTCKTESISHSPEIMPIFNMSTCNLERKNRPKKPLGLPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKIKDLQREVDLDSNVLGVLKDEKPNEIIVRNSPKFEVERRHVDTRVEICCAGKPGLLLSTVNILEAFGLEIQQCVISCFNDFKMQASCSEELEHRTILGSGDIKQELFRSAGYGGRCFTERFNSQRKECAYEGAVNDVPHTHTVTRQKRQELLWMDHCDQGSEINVGSGIIFSEEEDCRVVDEAI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0439 412 MobiDBLite consensus disorder prediction 102 129 - -
Lele25g0439 412 Gene3D - 177 240 IPR036638 GO:0046983
Lele25g0439 412 Pfam Helix-loop-helix DNA-binding domain 183 225 IPR011598 GO:0046983
Lele25g0439 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 238 IPR036638 GO:0046983
Lele25g0439 412 SMART finulus 182 231 IPR011598 GO:0046983
Lele25g0439 412 Coils Coil 215 242 - -
Lele25g0439 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Lele25g0439 412 CDD ACT_UUR-ACR-like 271 309 - -
Lele25g0439 412 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 76 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0439 Lele-ChrLele25 2749730 2753671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0439 167 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.444 1.23e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele25g0439 HLH 1.6e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0439 25 2749730 2753671 Lele27g1645 27 21962860 21964219 hybridization
Lele25g0439 25 2749730 2753671 Lele28g0445 28 2828471 2829807 hybridization