Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0432 ATGGGGAGAGGGAAGATCGTGATTAGGAGAATCGACAATTCGACGAGCAGGCAGGTAACGTTCTCCAAAAGAAGAAACGGTTTACTGAAAAAGGCGAAGGAGCTCGCAATCCTGTGCGACGCTGAGGTAGGAGTTATGATCTTCTCGAGCACCGGCAAGCTCTACGACTTCGCCAGCACAAGGTGCACGCTAAGTTCTCAGATATTCCATTTTCTTTTGATCTGCGATTCTGTTCCATTTCACCTTGTGCTGGGGTTTCTGTTACTATATGCGTCGCTTTTTCCGTTACTGCTATATTTCTGGTTGAAACGGCATGGATATATTCGTTGGGCGCTGAAGAAGAGTCATAATTAA 354 0.4605 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASTRCTLSSQIFHFLLICDSVPFHLVLGFLLLYASLFPLLLYFWLKRHGYIRWALKKSHN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0432 117 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele25g0432 117 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele25g0432 117 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele25g0432 117 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele25g0432 117 Gene3D - 13 70 IPR036879 GO:0003677|GO:0046983
Lele25g0432 117 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Lele25g0432 117 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele25g0432 117 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Lele25g0432 117 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele25g0432 117 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 63 - -
Lele25g0432 117 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0432 Lele-ChrLele25 2697157 2697510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0432 1 60 MADS-box Gene Family AT2G14210 91.667 5.13e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele25g0432 SRF-TF 3.4e-25 No_clan