Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0425 ATGCCTCACAGAGCGACTTACTTTTTCCCAAGGCAATTCCCGGAGCGTGGGTTGGATGAATCTTCGAAACAGCTATTAGATCACGAGGAGAAGAAAAATGTCAACTCCATCAAATCAGAGACCTTTGACGTTGAAAGCGACCCTAAAAAGGCACTTACAACAACTACTGCCGCAACAACAAAGGATGATGTCGTTTTCCCCTCTGGGAAACACTCAGCTGTATCCGACCTTTTCACGGGCAATGACAAGTTCCGGACTAAGCAGAAGCAAGTTGCTGCCTTCCGCGACTGGTTGATAGAGAAAAAAGGGGATAGATCGGGTCACGTGAAACCACACTCCCGCCGGTTATCCTGTGAAGGGGACCGCGAGCTTCTGCTTCCGTCGGACTCCTTGCCACGGCCGCCTCCCCCGGAGACAGTGAAAGATGCAATCGACCGGAGTTTTGACCGCCAAGTCTCGTTGCCGAGGTTATCCAGCGGCAGTAGCTGTGCTGGGAGCTTGTTCTCGGGGACAACGTTGGACGGCAATTTTTCTAGCGACATCAAGGAGGAAACGACATCGTCCCGAGTCTCCACCACAACAAGAAGACTGGAGGAACATGAGGAAGAAAGTAAGAAGACGTTGGCGCAGAAGTGCAAAGAGAGCTACTGCCTGCAGATCACGTTGGCTAAGAGACTCACCTGTTTAGCAAGTCTCGCTGCTGATGAGCCTGTGCTTACTTTGGACGCTGGAATCGAGACGTGGGATGTGGAATCCGTTTCTTATCGTCTCTGGGTTAGTGGCTGCTTGTCATACTACGACAAAATATCAGATGGTTTTTATAACATATTGGGGATGAATCCATATCTGTGGGTGATGTGCAATGAACTGGAGGAAGGTAGGCGGCTCCCACCTTTGATGACGCTTAAAGCAGTCGAACCAAGCGAGACGTCCATGGAGGTGGTTCTTGTAGATAGACACGAGGACTCTAGGCTAAAGGAACTCCATGATAAAGCACAAGAATTGTATTGTGATTCAGAGAACACCTTGGTATTGGTGGAAAAACTTGGAAAACTTGTTGCGATATATATGGGGGGTACCTTCCCGGTGGAGCAAGGAAATCTCCACAGGCAATGGAAGTTGGTTAGTAAGAGATTGAGGAATTTTCAGAATTGTGTTGTGCTTCCTATCGGCAGCCTATCTGCAGGACTTTGCCGGCATCGGGCAATCCTCTTTAAGAGATTGGCAGATTACATTGGTTTGCCATGTCGTATTGCTCGAGGTTGCAAGTATTGTGCTGCAGATCATAGATCTTCTTGCCTTGTCAAGATTAAAGATGACAGGCAACTCTCAAGGGAATATGTAGTTGATCTAGTTGGGGAACCTGGAAATGTCTATGGGCCAGATTCCTCAATTAATGGAGCATATGTCTGTTCAACGCCTTCCCCTTTTCAAATTTCTCATATACTGGATTCCCGGTATCGTTATATAGATGATGCGTCAAGTTCTTGGTGTTCTAGTTCCATAGACAAAAGTCATTTATATTCTGGCTGTACAAAGAAAGATCAACTGGTCAAAGGAAATAATTTGCTTAAGTGTCGTGTGAACTCAAGATATGCTTCAGTTGATAAAACTCATACAGTTAATGTTGAGGAACGTGAAGTTCTAGGTTCAAATTTGCCTTCTATTCAGGAAGGTGTTTCTGAAGACCTGCATTCAGCCACTGAGGAATTGCTGCATGAATATCCCATGCATGTTGAGGATTCAGTGGGCATAAAAGAAACTTCCAATAATGAGATCATTGTAACCGGAAGTTCGGTAGTGAAAGCAACTTCTAAGAAACCTATACCAGGCCCATCCGGCCAGTCAGAACAAGAATCTGTAGATAGTAGACTTGATAGCCGTGACCATTTCTCTGCAGGAAACATTCCAAGATATTTGAATCTTGAACCATCACTTGCCATGGATTGGCTTGAAATATCGTGGGAGGAATTACGCATTAAAGAGCGTGTTGGTGCTGGGTCATTTGGGACAGTGCACCGTGCTGAATGGCATGGATGTGATGTTGCAGTTAAGGTTTTAACAATTCAGGATTTCCAGGATGATCAGTTGAAAGAGTTTCTCAGAGAGGTTGCGATAATGAAACGTGTCCGCCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACAAAACGGCCTAATCTATCAATTGTAACAGAATATTTGCCGAGGGGTAGTTTATTTCGCCTGATACATAGGCCGGCATCTGGGGAATTGTTGGATCAGAGAAGACGATTACGGATGGCTTTAGATGTGGCTAAAGGGATCAATTATCTACACTGTTTGAGCCCTCCAATCGTGCATTGGGATCTCAAATCTCCAAATTTGTTAGTTGACAAAAATTGGACAGTAAAGGTGTGTGATTTTGGACTGTCGAGATTTAAGGCAAACACTTTCATATCGTCAAAATCTGTTGCTGGAACACCTGAATGGATGGCTCCGGAATTTCTTCGTGGAGAACCTTCAAATGAGAAGTCTGATGTTTACAGCTTTGGAGTCATCCTTTGGGAACTTGTGACCATGCAGCAACCATGGAATGGACTCAGTCCTGCCCAGGTGGTTGGAGCTGTTGCTTTTCAGAATCGGAAGCTTGCTATCCCTCCAAACATCTCCCCAGTATTGGCCTCCCTCATGGACTCTTGTTGGGATGATGATCCCAAGAAACGGCCTTCTTTCACCAGTATAGTAGAATCTCTAAAGAAGCTGCTGAGATCTCCGGTGGAGATGATAAAAATGGGAGGAACATAA 2787 0.4546 MPHRATYFFPRQFPERGLDESSKQLLDHEEKKNVNSIKSETFDVESDPKKALTTTTAATTKDDVVFPSGKHSAVSDLFTGNDKFRTKQKQVAAFRDWLIEKKGDRSGHVKPHSRRLSCEGDRELLLPSDSLPRPPPPETVKDAIDRSFDRQVSLPRLSSGSSCAGSLFSGTTLDGNFSSDIKEETTSSRVSTTTRRLEEHEEESKKTLAQKCKESYCLQITLAKRLTCLASLAADEPVLTLDAGIETWDVESVSYRLWVSGCLSYYDKISDGFYNILGMNPYLWVMCNELEEGRRLPPLMTLKAVEPSETSMEVVLVDRHEDSRLKELHDKAQELYCDSENTLVLVEKLGKLVAIYMGGTFPVEQGNLHRQWKLVSKRLRNFQNCVVLPIGSLSAGLCRHRAILFKRLADYIGLPCRIARGCKYCAADHRSSCLVKIKDDRQLSREYVVDLVGEPGNVYGPDSSINGAYVCSTPSPFQISHILDSRYRYIDDASSSWCSSSIDKSHLYSGCTKKDQLVKGNNLLKCRVNSRYASVDKTHTVNVEEREVLGSNLPSIQEGVSEDLHSATEELLHEYPMHVEDSVGIKETSNNEIIVTGSSVVKATSKKPIPGPSGQSEQESVDSRLDSRDHFSAGNIPRYLNLEPSLAMDWLEISWEELRIKERVGAGSFGTVHRAEWHGCDVAVKVLTIQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPNLSIVTEYLPRGSLFRLIHRPASGELLDQRRRLRMALDVAKGINYLHCLSPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWNGLSPAQVVGAVAFQNRKLAIPPNISPVLASLMDSCWDDDPKKRPSFTSIVESLKKLLRSPVEMIKMGGT 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0425 928 Gene3D Transferase(Phosphotransferase) domain 1 737 923 - -
Lele25g0425 928 MobiDBLite consensus disorder prediction 604 627 - -
Lele25g0425 928 Pfam Ethylene-responsive protein kinase Le-CTR1 250 458 - -
Lele25g0425 928 SMART serkin_6 658 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0425 928 FunFam Serine/threonine-protein kinase CTR1 737 922 - -
Lele25g0425 928 SUPERFAMILY Protein kinase-like (PK-like) 636 911 IPR011009 -
Lele25g0425 928 MobiDBLite consensus disorder prediction 604 620 - -
Lele25g0425 928 PRINTS Tyrosine kinase catalytic domain signature 839 861 IPR001245 GO:0004672|GO:0006468
Lele25g0425 928 PRINTS Tyrosine kinase catalytic domain signature 883 905 IPR001245 GO:0004672|GO:0006468
Lele25g0425 928 PRINTS Tyrosine kinase catalytic domain signature 732 745 IPR001245 GO:0004672|GO:0006468
Lele25g0425 928 PRINTS Tyrosine kinase catalytic domain signature 773 791 IPR001245 GO:0004672|GO:0006468
Lele25g0425 928 MobiDBLite consensus disorder prediction 103 141 - -
Lele25g0425 928 Gene3D Phosphorylase Kinase; domain 1 651 735 - -
Lele25g0425 928 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 196 917 - -
Lele25g0425 928 MobiDBLite consensus disorder prediction 179 203 - -
Lele25g0425 928 ProSitePatterns Protein kinases ATP-binding region signature. 664 685 IPR017441 GO:0005524
Lele25g0425 928 CDD STKc_MAP3K-like 664 912 - -
Lele25g0425 928 Coils Coil 190 210 - -
Lele25g0425 928 ProSiteProfiles Protein kinase domain profile. 658 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0425 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Lele25g0425 928 MobiDBLite consensus disorder prediction 103 122 - -
Lele25g0425 928 FunFam Serine/threonine-protein kinase isoform 1 648 736 - -
Lele25g0425 928 Pfam Protein tyrosine and serine/threonine kinase 658 912 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0425 Lele-ChrLele25 2595460 2601012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0425 1 927 MAP Kinase Kinase Kinase AT4G24480 57.669 0.0 1079
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lele25g0425 PK_Tyr_Ser-Thr 1.8e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0425 25 2595460 2601012 Lele27g1658 27 22105700 22111253 hybridization
Lele25g0425 25 2595460 2601012 Lele28g0433 28 2683641 2689344 hybridization